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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG90340
KRH12069
KRH33584
KRH37088
KRH41788
KRH60495

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G09770.1 KRG90340 AT1G04510.1 19629177
AT1G09770.1 KRH33584 AT1G04510.1 19629177
AT1G09770.1 KRH41788 AT3G18165.1 17575050
AT1G09770.1 KRH60495 AT3G18165.1 17575050
AT1G09770.1 KRH12069 AT4G15900.1 17575050
AT1G09770.1 KRH37088 AT4G15900.1 17575050
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG92639 Soybean nucleus 91.89 91.8
CDY47227 Canola nucleus 19.54 79.66
Bra027160.1-P Field mustard nucleus 19.33 78.81
CDY53058 Canola nucleus 19.23 78.39
AT1G09770.1 Thale cress nucleus 65.8 75.0
Bra019993.1-P Field mustard nucleus 64.24 73.22
CDX93482 Canola nucleus 64.24 73.14
CDX94951 Canola nucleus 64.03 72.9
CDY31065 Canola nucleus 63.83 72.49
CDY20673 Canola nucleus 63.62 72.25
Bra030798.1-P Field mustard nucleus 63.41 72.02
Zm00001d042287_P001 Maize extracellular, nucleus, plasma membrane 65.07 67.68
PGSC0003DMT400029953 Potato nucleus 68.81 67.14
Solyc04g009950.2.1 Tomato nucleus 68.5 66.77
VIT_14s0036g00510.t01 Wine grape nucleus 67.57 65.79
Os04t0348300-01 Rice nucleus 66.42 65.74
KXG34025 Sorghum nucleus 65.7 64.29
EES15997 Sorghum nucleus 65.49 63.89
TraesCS5D01G460800.1 Wheat nucleus 65.59 62.29
TraesCS5B01G459200.1 Wheat nucleus 65.8 61.88
TraesCS5A01G450800.1 Wheat nucleus 65.8 61.7
HORVU5Hr1G108630.3 Barley nucleus 65.8 59.83
TraesCS5D01G314000.1 Wheat nucleus 65.28 59.3
HORVU5Hr1G080010.3 Barley nucleus 65.59 58.97
TraesCS5A01G307100.1 Wheat nucleus 65.38 58.19
TraesCS5B01G307500.2 Wheat nucleus 65.49 58.12
GSMUA_Achr9P23340_001 Banana nucleus 66.74 56.97
Protein Annotations
Gene3D:1.10.10.60EntrezGene:100790369MapMan:15.5.2.1MapMan:15.5.2.2MapMan:16.4.5.1.2EMBL:ACUP02006582
InterPro:Cdc5p/Cef1ncoils:CoilEnsemblPlantsGene:GLYMA_10G165900GO:GO:0000981GO:GO:0001135GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006357GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0030154GO:GO:0043565GO:GO:0044212InterPro:Homeobox-like_sf
UniProt:I1LBQ2InterPro:IPR017930EnsemblPlants:KRH34143ProteinID:KRH34143ProteinID:KRH34143.1InterPro:Myb_dom
PFAM:PF11831PFAM:PF13921PFscan:PS51294PANTHER:PTHR10641PANTHER:PTHR10641:SF559InterPro:SANT/Myb
SMART:SM00717SUPFAM:SSF46689UniParc:UPI000233CDCBSEG:seg::
Description
hypothetical protein
Coordinates
chr10:+:40015135..40021916
Molecular Weight (calculated)
108453.0 Da
IEP (calculated)
5.011
GRAVY (calculated)
-0.848
Length
962 amino acids
Sequence
(BLAST)
001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDVACVKD ENYEPGDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR LASLQKKREL KAAGIDIRQR
201: KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPQFPT TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KRSKLMLPPP
301: QISDQELDDI AKLGYASDLA GSQELAEGSR ATQALLTNYA QTPGQGMTPL RTPQRTPAGK GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK
401: KKEIQTPNPM LTPSATPGAA GLTPRIGMTP TRDGFSFSMT PKGTPLRDEL HINEDMNMHD STKLELQRQA DMRRSLRSGL GSLPQPKNEY QIVMPPVLED
501: AEEPEEKIEE DMSDRIAREK AEEEARQQAL LRKRSKVLQR ELPRPPTASL ELIRNSLMRT DGDKSSFVPP TSIEQADEMI RRELLTLLEH DNGKYPLDDK
601: VIKEKKKGAK RAVNGSAVPV IEDFQEDEMK EADKLIKEEA LYLCAAMGHE DEPLDEFIEA HRTCLNDLMY FPTRNAYGLS SVAGNMEKLA ALQNEFENVR
701: NKLDDGKEKM VRLEKKVMVL TQGYEMRVKK SLWPQIEATF KQMDVAATEL ECFKALQKQE QLAASHRINN LWGEVQKQKE LEKTLQNRYG SLIEELEKMQ
801: NVMDQCRLLA QQQEEIEANN HARESTEIIE SKAGETDVQS TENCETVPDS VEHGHALAVE SSDDGTADQQ VDIVHDQATS SVSHDMDVDS DKLANPTPAA
901: ENVDGKLEVT ATASYTDDGK TMLEMGAAVE VSSSPNHDVV ADAVNSHDNS MEETNAVGEE TN
Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)
001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA
Arabidopsis Description
CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.