Factsheet for PGSC0003DMT400029953

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014424
PGSC0003DMT400023040
PGSC0003DMT400044280
PGSC0003DMT400075431

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	PGSC0003DMT400044280	AT1G04510.1	19629177
AT1G09770.1	PGSC0003DMT400075431	AT1G04510.1	19629177
AT1G09770.1	PGSC0003DMT400014424	AT3G18165.1	17575050
AT1G09770.1	PGSC0003DMT400023040	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009950.2.1	Tomato	nucleus	87.73	87.64
CDY47227	Canola	nucleus	18.97	79.24
Bra027160.1-P	Field mustard	nucleus	18.76	78.39
CDY53058	Canola	nucleus	18.66	77.97
Bra019993.1-P	Field mustard	nucleus	61.16	71.45
AT1G09770.1	Thale cress	nucleus	61.16	71.45
CDX93482	Canola	nucleus	60.95	71.12
CDX94951	Canola	nucleus	60.95	71.12
CDY31065	Canola	nucleus	60.95	70.96
Bra030798.1-P	Field mustard	nucleus	60.55	70.48
CDY20673	Canola	nucleus	59.84	69.66
KRG92639	Soybean	nucleus	67.65	69.26
KRH34143	Soybean	nucleus	67.14	68.81
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	61.36	65.41
VIT_14s0036g00510.t01	Wine grape	nucleus	65.31	65.18
Os04t0348300-01	Rice	nucleus	62.68	63.58
KXG34025	Sorghum	nucleus	62.68	62.87
EES15997	Sorghum	nucleus	62.68	62.68
TraesCS5D01G460800.1	Wheat	nucleus	62.07	60.41
TraesCS5B01G459200.1	Wheat	nucleus	62.17	59.92
TraesCS5A01G450800.1	Wheat	nucleus	61.87	59.45
HORVU5Hr1G108630.3	Barley	nucleus	62.78	58.51
TraesCS5D01G314000.1	Wheat	nucleus	61.56	57.32
HORVU5Hr1G080010.3	Barley	nucleus	61.66	56.82
GSMUA_Achr9P23340_001	Banana	nucleus	64.71	56.61
TraesCS5A01G307100.1	Wheat	nucleus	61.76	56.34
TraesCS5B01G307500.2	Wheat	nucleus	61.87	56.27

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102589616	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	InterPro:Cdc5p/Cef1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870
GO:GO:0009987	GO:GO:0010204	GO:GO:0042742	GO:GO:0050832	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:M1ATK6	InterPro:Myb_dom	PFAM:PF11831	PFAM:PF13921	EnsemblPlantsGene:PGSC0003DMG400011500	PGSC:PGSC0003DMG400011500
EnsemblPlants:PGSC0003DMT400029953	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000294D42A	RefSeq:XP_006361426.1	SEG:seg	:	:

Description

CDC5 [Source:PGSC_GENE;Acc:PGSC0003DMG400011500]

Coordinates

chr4:+:6196888..6202349

Molecular Weight (calculated)

111186.0 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.917

Length

986 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDPNDDPR KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDVRQR
201: KRKRRGIDYN AEIPFEKKPP PGFYDITEED RPVDQPKFPT TIEELEGERR VDKEARLRKQ DVARNKIAER QDAPTSILHA NKLNDPEAVR KRSKLNLPAP
301: QIPDHELEAI AKIGIASDLI GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK QDSIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK
401: KREVQTPNPL LTPSATPGAT SLTPRIGMTP SRDSYGMTPK GTPMRDELHI NEEMDMHNNA KLGQFNSKKE LLSGLKSLPQ PKNEYQIVVQ QPPEENEEPE
501: EKIEEDMSDR IAREKAEEEA KRQALLRKRS KVLQRELPRP PIASLELIKS SLMRADEDKS SFVPPTLIEQ ADEMIRKELV SLLEHDNTKY PLDEKPEKEK
601: KKGVKRKIVA EPAIEDFEED ELKEADGLIK DEAHFLRVAM GHESESLDEF VEVHKTTLND IMYFPTRNAY GLSSVAGNME KLAALQNEFE NVKKKMDDDT
701: KKATKLEQKI KVLTNGYQIR AGKLWSQIES TFKKMDTAGT ELECFRALQK QEQLAASHRI NNMWEEVQKQ KELERTLQKR YGDLIADTQK IQHLMDEYRI
801: QDQMQEEIAA KNRALELAKA EIAEKESIPS ADDVEPSGTV QCSNTEENSA SASHVPIEAD VHAEPSGTDQ CSNAEENSAS IEADNVHVEP SGTSQCPIAE
901: ETSASVSHDT TPQDVEGQVQ VADVSTMDAE ALSDHVPMEG QQNLVEESNT DVTKTEDSTV AAGDVDTKTD DSVVVAGDGE ADPKNM

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.