Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119010.2.1 | Tomato | nucleus | 92.83 | 97.08 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 58.17 | 70.53 |
| AT3G18165.1 | Thale cress | cytosol | 67.33 | 66.8 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 37.85 | 66.43 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 66.14 | 65.61 |
| CDX95551 | Canola | cytosol | 66.14 | 65.61 |
| KRH41788 | Soybean | nucleus | 65.74 | 65.48 |
| Bra021297.1-P | Field mustard | cytosol | 65.74 | 65.22 |
| CDX92209 | Canola | nucleus | 65.74 | 65.22 |
| Bra022288.1-P | Field mustard | nucleus | 65.74 | 65.22 |
| CDY24431 | Canola | nucleus | 65.34 | 64.82 |
| CDY24603 | Canola | cytosol | 21.91 | 62.5 |
| EES00531 | Sorghum | cytosol | 59.76 | 59.06 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 57.37 | 56.25 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 56.97 | 55.86 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 56.97 | 55.86 |
| HORVU3Hr1G037080.1 | Barley | plastid | 57.37 | 48.32 |
| Zm00001d040357_P001 | Maize | cytosol | 60.16 | 41.83 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 28.29 | 35.15 |
| CDY18500 | Canola | cytosol | 65.74 | 27.55 |
Protein Annotations
| EntrezGene:102605698 | MapMan:16.4.5.1.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006950 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009870 |
| GO:GO:0009987 | GO:GO:0010204 | GO:GO:0042742 | GO:GO:0050832 | UniProt:M1A475 | PFAM:PF05700 |
| EnsemblPlantsGene:PGSC0003DMG400005659 | PGSC:PGSC0003DMG400005659 | EnsemblPlants:PGSC0003DMT400014424 | PANTHER:PTHR13296 | InterPro:SPF27 | UniParc:UPI000295E383 |
| RefSeq:XP_006341555.1 | : | : | : | : | : |
Description
Pre-mRNA-splicing factor SPF27 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400005659]
Coordinates
chr3:-:58495523..58499257
Molecular Weight (calculated)
29251.5 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.904
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKDGDILM LEAPPEYRPA VSSSAEVIDA LPYIDDDYGD PNVKEEVDRL VEEEMRRSSK KPSDFLKNLP PLRKFNFENH PMLAREYERV RAGKPPVQID
101: TSRYGLEVPP VNKRNDETAW KQSLQKAQRL LQHQVIRLEN LDLMSKHGPD VWKLYNQRLE AFLARMQSQA AELNEMIETA NRERKYHQQT TAYELNALSM
201: QWRELCLKNI EIQSACGELQ DHREQLKKEA EERGWNLEAN VENGNTPYAE L
101: TSRYGLEVPP VNKRNDETAW KQSLQKAQRL LQHQVIRLEN LDLMSKHGPD VWKLYNQRLE AFLARMQSQA AELNEMIETA NRERKYHQQT TAYELNALSM
201: QWRELCLKNI EIQSACGELQ DHREQLKKEA EERGWNLEAN VENGNTPYAE L
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.