Factsheet for PGSC0003DMT400057595

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078970.2.1	Tomato	nucleus	96.21	97.89
PGSC0003DMT400078422	Potato	cytosol	47.41	94.18
CDY55054	Canola	cytosol	21.03	92.42
VIT_01s0026g00040.t01	Wine grape	nucleus	82.24	81.68
Bra019919.1-P	Field mustard	nucleus	78.1	80.18
AT1G10580.1	Thale cress	nucleus	78.97	79.93
KRG92226	Soybean	nucleus	77.76	78.43
CDX93405	Canola	cytosol	21.03	78.21
KRH34573	Soybean	nucleus	77.93	77.93
GSMUA_Achr1P14840_001	Banana	nucleus	75.0	74.61
GSMUA_Achr3P00660_001	Banana	nucleus	74.83	73.94
EER94734	Sorghum	nucleus	71.38	72.38
Zm00001d047245_P001	Maize	extracellular, plasma membrane	70.86	71.85
Os03t0397500-01	Rice	nucleus	70.86	71.73
TraesCS4D01G154600.2	Wheat	nucleus	70.34	71.58
TraesCS4A01G160700.1	Wheat	nucleus	70.17	71.4
Zm00001d029435_P001	Maize	nucleus	70.17	71.28
TraesCS4B01G157400.1	Wheat	nucleus	70.0	70.98
HORVU4Hr1G039720.1	Barley	cytosol	69.48	66.83
PGSC0003DMT400082429	Potato	cytosol	18.45	24.54

Protein Annotations

EntrezGene:102585703	MapMan:16.4.5.2.11	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1C1C3	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400022364
PGSC:PGSC0003DMG400022364	EnsemblPlants:PGSC0003DMT400057595	PRINTS:PR00320	InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002964651	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006347108.1	SEG:seg

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022364]

Coordinates

chr2:-:34611485..34616177

Molecular Weight (calculated)

66049.7 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.733

Length

580 amino acids

Sequence
(BLAST)

001: MDLLRSYAED DGIANPNSQS SPDSSPIRML PSKSAAPKVD DTMLALTVAG EAARAQSKPL DPTQHLVGFN PTYEQLWAPI CGPAHPYAKD GLAQGLRNHK
101: LGFVEDASIE PFVFDEQYNT FQKYGYAVDP SENSYIGDLE KMKECDAISV YNIPQHEQKK RKLEKKKEKM EEEEGDEQDV DMTEVENPST DTWLMKNRKS
201: PWAGKKEGLQ VELSEEQKKY AEEYAKKKGE ERGGDKDKAE PMVEKSTFHG KEEKDYQGRS WIAPPKDAKA ANDHCYIPKR LVHTWSGHTK GVSAIRFFPK
301: HGHLILSAGM DTKVKIWDVY NSGKCMRTYM GHTKAVRDIW FSNDGSKFLT AGYDKYIKYW DTETGQVIQT FTTGKIPYVV RLNPDEDKQN VLLAGMSDKK
401: IVQWDINSGQ ITQEYDQHLG AVNTITFVDN NRRFVTSSDD KSLRVWEYGI PVVIKYISEP HMHSMPSISP HPNGNWIAAQ SLDNQILIYS TRERFQLNKK
501: KRFAGHIVAG YACQVNFSPD GRFVFSGDGE GRCWFWDWKS CKVFRTLKCH DGVCIGAEWH PLEQSKVATC GWDGLIKYWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.