CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34573	Soybean	nucleus	95.48	94.66
CDY55054	Canola	cytosol	20.35	88.64
VIT_01s0026g00040.t01	Wine grape	nucleus	81.22	79.97
Solyc02g078970.2.1	Tomato	nucleus	78.26	78.95
PGSC0003DMT400057595	Potato	nucleus	78.43	77.76
Bra019919.1-P	Field mustard	nucleus	76.17	77.52
AT1G10580.1	Thale cress	nucleus	76.7	76.96
PGSC0003DMT400078422	Potato	cytosol	38.96	76.71
CDX93405	Canola	cytosol	20.35	75.0
GSMUA_Achr3P00660_001	Banana	nucleus	76.0	74.45
GSMUA_Achr1P14840_001	Banana	nucleus	75.48	74.44
Zm00001d047245_P001	Maize	extracellular, plasma membrane	72.0	72.38
Os03t0397500-01	Rice	nucleus	71.83	72.08
EER94734	Sorghum	nucleus	71.48	71.85
Zm00001d029435_P001	Maize	nucleus	71.13	71.63
TraesCS4A01G160700.1	Wheat	nucleus	70.09	70.7
TraesCS4D01G154600.2	Wheat	nucleus	69.91	70.53
TraesCS4B01G157400.1	Wheat	nucleus	69.74	70.1
HORVU4Hr1G039720.1	Barley	cytosol	69.22	66.0
KRG91221	Soybean	nucleus	20.17	27.36
KRH55520	Soybean	extracellular	13.04	22.73
KRH25946	Soybean	nucleus	14.43	22.19

Protein Annotations

EntrezGene:100778138	MapMan:16.4.5.2.11	Gene3D:2.130.10.10	EMBL:ACUP02012735	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_20G198200	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7N4K5
EnsemblPlants:KRG92226	ProteinID:KRG92226	ProteinID:KRG92226.1	PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00029647CD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:43551880..43556602

Molecular Weight (calculated)

64973.3 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.691

Length

575 amino acids

Sequence
(BLAST)

001: MDLLHQYSDG DDPDSPSENP SSPPRLLPGR SAAPNVDDTM LALTVASSSS ALSRPIDPTQ HLVGFNPSYD QLWAPIQGPA HPFAKDGIAQ GMRNHKLGFV
101: EDASIEPFLF DEQYNTFHKF GYAADPAANN FVGDLDALRD NNAVSVYNIP RHEHKKRRIE AKQKKKSEED DDGDVNEEIE NPASEAWIMK NKKSPWAGKK
201: EGLQGELTEE QQKYAEEYAK KKGEEKSGLG GEKVEVVKDK STFHGKEERD YQGRSWIAPP KDAKANSDRC YIPKRLIHTW SGHTKGVSAI RFFPKYGHLI
301: LSAGMDTKVK IWDVFNSGKC MRTYMGHSKA VRDICFSNDG TKFLSAGYDK NIKYWDTETG QVISTFATGK IPYVVKLNPD EDKQNVLLAG MSDKKIVQWD
401: MNTGQITQEY DQHLGAVNTI TFVDNNRRFV TSSDDKSLRV WEFGIPVVIK YISEPHMHSM PSISLHPNAN WLAAQSLDNQ ILIYSTREKF QLNKRKRFGG
501: HIVAGYACQV NFSPDGQYVM SGDGEGKCWF WDWKTCKVYR TLKCHEGVCI GCEWHPLEQS KVATCGWDGM IKYWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.