CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93405	Canola	cytosol	100.0	84.62
PGSC0003DMT400078422	Potato	cytosol	62.88	28.42
Bra019919.1-P	Field mustard	nucleus	100.0	23.36
AT1G10580.1	Thale cress	nucleus	94.7	21.82
Solyc02g078970.2.1	Tomato	nucleus	93.18	21.58
PGSC0003DMT400057595	Potato	nucleus	92.42	21.03
VIT_01s0026g00040.t01	Wine grape	nucleus	90.15	20.38
KRG92226	Soybean	nucleus	88.64	20.35
Zm00001d029435_P001	Maize	nucleus	87.12	20.14
GSMUA_Achr1P14840_001	Banana	nucleus	88.64	20.07
KRH34573	Soybean	nucleus	87.88	20.0
GSMUA_Achr3P00660_001	Banana	nucleus	88.64	19.93
Zm00001d047245_P001	Maize	extracellular, plasma membrane	86.36	19.93
Os03t0397500-01	Rice	nucleus	86.36	19.9
TraesCS4A01G160700.1	Wheat	nucleus	85.61	19.82
TraesCS4D01G154600.2	Wheat	nucleus	85.61	19.82
EER94734	Sorghum	nucleus	85.61	19.76
TraesCS4B01G157400.1	Wheat	nucleus	85.61	19.76
HORVU4Hr1G039720.1	Barley	cytosol	85.61	18.74
CDY43036	Canola	nucleus	30.3	8.99
CDY43821	Canola	nucleus	29.55	8.82
CDY20619	Canola	extracellular	6.06	5.88
CDY55055	Canola	nucleus	4.55	4.05
CDX93404	Canola	nucleus	4.55	4.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	GO:A0A078J085	UniProt:A0A078J085	EnsemblPlants:CDY55054	ProteinID:CDY55054
ProteinID:CDY55054.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0071013	EnsemblPlantsGene:GSBRNA2T00015014001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	InterPro:PRPF17	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EEED4F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

BnaCnng28120DBnaCnng28120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J085]

Coordinates

chrLK033373:-:50662..52281

Molecular Weight (calculated)

15272.1 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.514

Length

132 amino acids

Sequence
(BLAST)

001: MDCKVKIWDV YNSGKCMRTY MGHGKAVRDI CFSNDGTKFL TAGYDKNIKY WDTETGQKIV QWDINSGEIT QEYDQHLGAV NTITFVDNNR RFSCRVFKTL
101: RCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YW

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.