CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029021.1-P	Field mustard	nucleus	95.73	96.6
CDY43821	Canola	nucleus	90.11	90.72
AT5G54520.1	Thale cress	cytosol	77.08	75.05
VIT_19s0014g04680.t01	Wine grape	cytosol	55.73	59.33
TraesCS2D01G060600.1	Wheat	plastid	44.49	57.06
KRG91221	Soybean	nucleus	53.93	56.6
HORVU2Hr1G011560.1	Barley	plastid	43.6	55.91
GSMUA_Achr4P25600_001	Banana	cytosol	53.03	54.13
PGSC0003DMT400082429	Potato	cytosol	51.91	52.98
Solyc04g009360.2.1	Tomato	cytosol	51.46	52.52
Os02t0319800-01	Rice	cytosol	52.81	52.11
TraesCS2B01G074700.1	Wheat	nucleus	49.66	49.89
TraesCS2A01G061500.1	Wheat	nucleus	50.11	49.78
EES15688	Sorghum	cytosol	48.54	48.43
KRH55520	Soybean	extracellular	35.51	47.88
Zm00001d000150_P001	Maize	cytosol	47.64	47.64
Zm00001d000074_P002	Maize	cytosol	47.64	47.64
KRH25946	Soybean	nucleus	38.65	45.99
CDY55054	Canola	cytosol	8.99	30.3
CDX93405	Canola	cytosol	8.99	25.64
CDY20619	Canola	extracellular	5.84	19.12
CDX93404	Canola	nucleus	4.27	12.84
CDY55055	Canola	nucleus	4.04	12.16

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078HZR8	EnsemblPlants:CDY43036	ProteinID:CDY43036	ProteinID:CDY43036.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00075863001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF08662	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44566	SMART:SM00320	SUPFAM:SSF50978	InterPro:TIF_beta_prop-like	UniParc:UPI0004EEB05E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA03g11830DBnaA03g11830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZR8]

Coordinates

chrLK032543:+:123708..125532

Molecular Weight (calculated)

49447.2 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.430

Length

445 amino acids

Sequence
(BLAST)

001: MDLLRNSYAN DSDDEPEPVT DNRLTSKTAT PSLPSKRPYP EPEERQYKPI RKPNPPYSSY SDPQTSSSTI PITFPGRYVS KRERSLLASL STAPTQIQKP
101: SVNSPTGTYP YFLGSISDSQ VPRHVLSKGS SFRTGMPSRM SVSLTGHTKA VTSIDWSTSH VHLLASSGLD GAVYVWNVWN SGEKKARSFL HHNGPVKDVK
201: WSKEGLSLLS CGYDCTSRLF DVERGVETQA FKEDQVVGVV KFHPDNANLF LSGGLKGSLR LWDIRSNKVV HEYVKDLGPI LDVEFMPGGK RFVSSSDVSG
301: RNISENAVIV WDVSREVPLS NQVYAEAYTC PCIKHHPRDS VFIAQSHGNY TAIFSANPPF KLNKYKRYEG HWVAGFPIKC NFSPDGETLV SGSSDGFIYV
401: FGYKSTELIK KLKAYEHPCV DVAYHPVLPN VIACCSWDGQ VSVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.