Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029021.1-P | Field mustard | nucleus | 76.15 | 78.91 |
| CDY43821 | Canola | nucleus | 75.93 | 78.51 |
| CDY43036 | Canola | nucleus | 75.05 | 77.08 |
| VIT_19s0014g04680.t01 | Wine grape | cytosol | 56.46 | 61.72 |
| TraesCS2D01G060600.1 | Wheat | plastid | 44.2 | 58.21 |
| KRG91221 | Soybean | nucleus | 53.61 | 57.78 |
| HORVU2Hr1G011560.1 | Barley | plastid | 43.33 | 57.06 |
| PGSC0003DMT400082429 | Potato | cytosol | 52.52 | 55.05 |
| Solyc04g009360.2.1 | Tomato | cytosol | 52.08 | 54.59 |
| GSMUA_Achr4P25600_001 | Banana | cytosol | 49.67 | 52.06 |
| Os02t0319800-01 | Rice | cytosol | 50.98 | 51.66 |
| TraesCS2B01G074700.1 | Wheat | nucleus | 49.89 | 51.47 |
| TraesCS2A01G061500.1 | Wheat | nucleus | 49.67 | 50.67 |
| Zm00001d000150_P001 | Maize | cytosol | 47.7 | 48.99 |
| Zm00001d000074_P002 | Maize | cytosol | 47.7 | 48.99 |
| KRH55520 | Soybean | extracellular | 35.01 | 48.48 |
| EES15688 | Sorghum | cytosol | 47.26 | 48.43 |
| KRH25946 | Soybean | nucleus | 38.51 | 47.06 |
| AT1G10580.1 | Thale cress | nucleus | 24.73 | 19.72 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:835540 | UniProt:A0A178UF32 | ProteinID:AED96505.1 | ArrayExpress:AT5G54520 |
| EnsemblPlantsGene:AT5G54520 | RefSeq:AT5G54520 | TAIR:AT5G54520 | RefSeq:AT5G54520-TAIR-G | EnsemblPlants:AT5G54520.1 | TAIR:AT5G54520.1 |
| UniProt:F4K0D3 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | RefSeq:NP_200263.2 | ProteinID:OAO92305.1 | PFAM:PF00400 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0025022 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44566 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000034F304 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
Coordinates
chr5:-:22146504..22149302
Molecular Weight (calculated)
50617.6 Da
IEP (calculated)
8.150
GRAVY (calculated)
-0.391
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.