Factsheet for Zm00001d000150_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000074_P002	Maize	cytosol	100.0	100.0
EES15688	Sorghum	cytosol	88.31	88.12
TraesCS2D01G060600.1	Wheat	plastid	63.6	81.56
HORVU2Hr1G011560.1	Barley	plastid	60.45	77.52
TraesCS2A01G061500.1	Wheat	nucleus	73.48	72.99
TraesCS2B01G074700.1	Wheat	nucleus	72.13	72.46
Os02t0319800-01	Rice	cytosol	72.13	71.18
VIT_19s0014g04680.t01	Wine grape	cytosol	51.69	55.02
GSMUA_Achr4P25600_001	Banana	cytosol	53.71	54.82
KRG91221	Soybean	nucleus	50.79	53.3
PGSC0003DMT400082429	Potato	cytosol	48.99	50.0
Solyc04g009360.2.1	Tomato	cytosol	48.76	49.77
CDY43821	Canola	nucleus	48.31	48.64
Bra029021.1-P	Field mustard	nucleus	47.64	48.07
AT5G54520.1	Thale cress	cytosol	48.99	47.7
CDY43036	Canola	nucleus	47.64	47.64
KRH25946	Soybean	nucleus	37.08	44.12
KRH55520	Soybean	extracellular	31.46	42.42
Zm00001d047245_P001	Maize	extracellular, plasma membrane	23.15	18.01
Zm00001d029435_P001	Maize	nucleus	22.92	17.86

Protein Annotations

EntrezGene:100281243	Gene3D:2.130.10.10	MapMan:35.1	UniProt:B6STM0	EMBL:BT066273	EMBL:EU956085
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44566	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000182B6B2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d000150	EnsemblPlants:Zm00001d000150_P001	EnsemblPlants:Zm00001d000150_T001	SEG:seg	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chrB73V4_ctg75:-:116649..127114

Molecular Weight (calculated)

49007.2 Da

IEP (calculated)

7.741

GRAVY (calculated)

-0.192

Length

445 amino acids

Sequence
(BLAST)

001: MDLLSAAYGA TSDDEDAADR PFSMPVATRS ASFSPPPMKP PRWESHPYLP PTHCFPQPPL PDAALPLASP SSGRYISKRE RALLASSGAH IESGSSLPLT
101: RVDFESAVGS ITYPNLRADI LHSLRCQPKP GPSTSFPLRL SVCLKGHTKA INCVDWSPTH GHLLASAGMD HTVHVWNVWD KGNTTARVLK HHTAAVKDVR
201: WSLHRPFLLS GGLDCSLQLV DVVEGKVMEV FKEDQAVEVI KFNPSNPDLF LSGGSKGSLK LWDIRCGLVT KEFQRSLGTI LDIDFSADGR QFISSTDTTR
301: SNISENTIIV WDVLRQVPLS NQVYTEAFTC PCVRYHPREA SFVAQSNGNY IAIFSARPPF KLNKYTRFEG HGVWGFPVKC SFSLGGRELA SGSSDGSIYF
401: YDYRSARLLR KIEAFKEACT DVAYHPVMPN VIAACSWAGE ISVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.