CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91221	Soybean	nucleus	71.93	63.44
TraesCS2D01G060600.1	Wheat	plastid	44.65	48.13
VIT_19s0014g04680.t01	Wine grape	cytosol	53.48	47.85
HORVU2Hr1G011560.1	Barley	plastid	43.85	47.26
Solyc04g009360.2.1	Tomato	cytosol	51.87	44.5
PGSC0003DMT400082429	Potato	cytosol	51.6	44.27
KRH55520	Soybean	extracellular	38.77	43.94
GSMUA_Achr4P25600_001	Banana	cytosol	48.4	41.51
CDY43821	Canola	nucleus	46.79	39.59
Bra029021.1-P	Field mustard	nucleus	46.52	39.46
Os02t0319800-01	Rice	cytosol	46.79	38.8
CDY43036	Canola	nucleus	45.99	38.65
AT5G54520.1	Thale cress	cytosol	47.06	38.51
TraesCS2B01G074700.1	Wheat	nucleus	45.19	38.15
TraesCS2A01G061500.1	Wheat	nucleus	45.45	37.95
Zm00001d000074_P002	Maize	cytosol	44.12	37.08
Zm00001d000150_P001	Maize	cytosol	44.12	37.08
EES15688	Sorghum	cytosol	43.85	36.77
KRG92226	Soybean	nucleus	22.19	14.43
KRH34573	Soybean	nucleus	21.66	13.97

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A0R0H5S4	EMBL:ACUP02007403	EnsemblPlantsGene:GLYMA_12G141100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH25946
ProteinID:KRH25946	ProteinID:KRH25946.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44566	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006EDCD79	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:17692581..17701361

Molecular Weight (calculated)

41444.9 Da

IEP (calculated)

9.881

GRAVY (calculated)

-0.224

Length

374 amino acids

Sequence
(BLAST)

001: MTLCKPVRNE SGCQKLAGKK KKKNCAVRWR VVLETSRGVW KRALQRQGLA LTGSILDADI HHNILSLLKS KAKGHQSPNL ISEKLSASLY GHTKAVNAIH
101: WSSTHAHLLA SAGMDHAVCI WNVWGRNQKK ACVLNFHNAA VKDVKWSQQG HFLLSCGYDC TSRLIDVEKG LETRVFREDQ IVGVIKFHPD NSNPTKHGHP
201: IPLSCPGVRH VSVSVSNTTP TLTMLVLHSS NLFLSGGSKG RFKLWDARTG KVYVEAYTCP CVRCHPFDSI FVAQSNGNYD AIFTTTPPYR LNKYKRYEGH
301: VVSGFPIKCN FSLDGKKLAS GSSDGSIYLY DYQSSKVVKK IKAHDQACID VAFHPVIPNV IASCSWDGSI LVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.