CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92226	Soybean	nucleus	94.66	95.48
CDY55054	Canola	cytosol	20.0	87.88
VIT_01s0026g00040.t01	Wine grape	nucleus	81.03	80.48
Solyc02g078970.2.1	Tomato	nucleus	77.59	78.95
PGSC0003DMT400057595	Potato	nucleus	77.93	77.93
Bra019919.1-P	Field mustard	nucleus	75.86	77.88
AT1G10580.1	Thale cress	nucleus	76.38	77.31
PGSC0003DMT400078422	Potato	cytosol	38.45	76.37
GSMUA_Achr3P00660_001	Banana	nucleus	75.52	74.62
GSMUA_Achr1P14840_001	Banana	nucleus	74.83	74.44
CDX93405	Canola	cytosol	20.0	74.36
Zm00001d047245_P001	Maize	extracellular, plasma membrane	72.07	73.08
EER94734	Sorghum	nucleus	71.9	72.9
Zm00001d029435_P001	Maize	nucleus	71.55	72.68
Os03t0397500-01	Rice	nucleus	71.72	72.6
TraesCS4A01G160700.1	Wheat	nucleus	70.34	71.58
TraesCS4D01G154600.2	Wheat	nucleus	70.34	71.58
TraesCS4B01G157400.1	Wheat	nucleus	69.83	70.8
HORVU4Hr1G039720.1	Barley	cytosol	69.48	66.83
KRG91221	Soybean	nucleus	19.48	26.65
KRH55520	Soybean	extracellular	13.1	23.03
KRH25946	Soybean	nucleus	13.97	21.66

Protein Annotations

EntrezGene:100816419	MapMan:16.4.5.2.11	Gene3D:2.130.10.10	EMBL:ACUP02006610	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_10G192200
GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0071013	UniProt:I1LCG9	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH34573
ProteinID:KRH34573	ProteinID:KRH34573.1	PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233D3A4
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:42461214..42465402

Molecular Weight (calculated)

65495.7 Da

IEP (calculated)

6.951

GRAVY (calculated)

-0.728

Length

580 amino acids

Sequence
(BLAST)

001: MDLLHQYSDG DDPDSPSQNP SSPPRLLAGR SAAPKVDDTM LALTVTSSSS AALSRPIDPT QHLVGFNPSY DQLWAPIQGP AHPFAKDGIA QGMRNHKLGF
101: VEDASIEPFL FDEQYNTFHK FGYAADPAAN NFVGDLDALR DNNAVSVYNI PRHEHKKRRI EAKEKKKSDE NTGDDDDNND EEENQNPASE AWITKNKKSP
201: WAGKKEGLQG ELTEEQQKYA EEYAKKKGEE KSGFGGEKVE VVKDKSTFHG KEEKDYQGRS WIAPPKDAKA SNDHCYMPKR LIHTWSGHTK GVSAIRFFPK
301: YGHLILSAGM DTKIKIWDVF NSGKCMRTYM GHSKAVRDIC FSNDGTKFLS AGYDKNIKYW DTETGQVIST FATGKIPYVV KLNPDEDKQN VLLAGMSDKK
401: IVQWDMNTGQ ITQEYDQHLG AVNTITFVDN NRRFVTSSDD KSLRVWEFGI PVVIKYISEP HMHSMPSISL HPNANWLAAQ SLDNQILIYS TREKFQLNKK
501: KRFGGHIVAG YACQVNFSPD GRFVMSGDGE GKCWFWDWKT CKVYRTLKCH EGVCIGCEWH PLEQSKVATC GWDGMIKYWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.