Factsheet for GSMUA_Achr1P14840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00660_001	Banana	nucleus	89.71	89.1
CDY55054	Canola	cytosol	20.07	88.64
VIT_01s0026g00040.t01	Wine grape	nucleus	77.7	77.57
Bra019919.1-P	Field mustard	nucleus	74.1	76.46
Solyc02g078970.2.1	Tomato	nucleus	74.1	75.79
AT1G10580.1	Thale cress	nucleus	74.44	75.74
KRG92226	Soybean	nucleus	74.44	75.48
CDX93405	Canola	cytosol	20.07	75.0
PGSC0003DMT400057595	Potato	nucleus	74.61	75.0
KRH34573	Soybean	nucleus	74.44	74.83
Os03t0397500-01	Rice	nucleus	72.56	73.82
Zm00001d047245_P001	Maize	extracellular, plasma membrane	72.38	73.78
EER94734	Sorghum	nucleus	72.21	73.6
Zm00001d029435_P001	Maize	nucleus	71.7	73.2
TraesCS4D01G154600.2	Wheat	nucleus	70.67	72.28
TraesCS4A01G160700.1	Wheat	nucleus	70.33	71.93
TraesCS4B01G157400.1	Wheat	nucleus	70.5	71.85
PGSC0003DMT400078422	Potato	cytosol	34.31	68.49
HORVU4Hr1G039720.1	Barley	cytosol	69.98	67.66
GSMUA_Achr4P25600_001	Banana	cytosol	17.84	23.85

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	EnsemblPlantsGene:GSMUA_Achr1G14840_001
EnsemblPlants:GSMUA_Achr1P14840_001	EnsemblPlants:GSMUA_Achr1T14840_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RZZ2
PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002961C9D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

Pre-mRNA-processing factor 17 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14840_001]

Coordinates

chr1:+:11215383..11221638

Molecular Weight (calculated)

65179.1 Da

IEP (calculated)

6.438

GRAVY (calculated)

-0.716

Length

583 amino acids

Sequence
(BLAST)

001: MDLLRGYTEG DDDNDGPEEM SRGGGGEGES LESAAATEGE GEAEGSSSPD SSPPRLPAKS SAPRVDDTTL ALAAAESARA IHRPLDPAQH AVAFNPTYDQ
101: LWAPIHGPAH PFAKDGVAQG MRNHKLGFVE DAAIQPFLFD EQYNTFHKYG YATDPSGLSY VGDLETLTKN QALSVYNMPQ QEQKRRRLQM KAPDAEEADP
201: SAAGPENEVV QGELTEEQKK YAEEHAEKKA EKERGEGRAG NKAEHSDKST FHGKEERDYQ GRSWIEPPKD AKPKNDHCYI PKRWVHTWSG HTKGVAAIRF
301: FPKHGHLLLS AGMDSKVKIW DVFNSGKCMR TYMGHSKAVR DISFSIDGTK FLSAGYDKNI KYWDTETGKV ISTFSTGKVP YVVKLNPDED KQNILLAGMS
401: DKKIVQWDMN SGTITQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISLHPNSNWL AAQSLDNQIL IYSTKERFQL
501: NKKKRFAGHI AAGYACQVNF SPDGRFVISG DGEGKCWFWD WKSCKVFRTL KCHEGVCIGC EWHPLEQSKV ATCGWDGMIK YWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.