Factsheet for GSMUA_Achr4P25600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G011560.1	Barley	plastid	50.69	63.69
TraesCS2D01G060600.1	Wheat	plastid	50.46	63.4
VIT_19s0014g04680.t01	Wine grape	cytosol	58.03	60.53
Os02t0319800-01	Rice	cytosol	59.86	57.87
KRG91221	Soybean	nucleus	55.5	57.08
TraesCS2B01G074700.1	Wheat	nucleus	57.11	56.21
TraesCS2A01G061500.1	Wheat	nucleus	57.34	55.8
Solyc04g009360.2.1	Tomato	cytosol	55.73	55.73
PGSC0003DMT400082429	Potato	cytosol	55.5	55.5
EES15688	Sorghum	cytosol	55.28	54.04
Bra029021.1-P	Field mustard	nucleus	54.36	53.74
Zm00001d000150_P001	Maize	cytosol	54.82	53.71
Zm00001d000074_P002	Maize	cytosol	54.82	53.71
CDY43821	Canola	nucleus	53.9	53.17
CDY43036	Canola	nucleus	54.13	53.03
AT5G54520.1	Thale cress	cytosol	52.06	49.67
KRH25946	Soybean	nucleus	41.51	48.4
KRH55520	Soybean	extracellular	34.4	45.45
GSMUA_Achr3P00660_001	Banana	nucleus	24.08	17.89
GSMUA_Achr1P14840_001	Banana	nucleus	23.85	17.84

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G25600_001
EnsemblPlants:GSMUA_Achr4P25600_001	EnsemblPlants:GSMUA_Achr4T25600_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0SS21
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44566	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002961883	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

WD domain, G-beta repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G25600_001]

Coordinates

chr4:-:25060501..25065583

Molecular Weight (calculated)

48199.3 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.253

Length

436 amino acids

Sequence
(BLAST)

001: MDLLWNAYGV PSDQEEDTGQ RQRQHRPLQR PLPAPKRFRS EAYVPPQSPS PPLVFPPEPS GRYVSKRERA ILAAAAAAAS STASAPLPPP HLHPSTIVGS
101: ISDSDLPSDI VTFLKCQRKG LAGRRGISTK LAVSLDGHRS AVNSLQWSKS HGHLLASAGM DQTVNVWNVW SRNQQKARVF RCHNAAVKDV RWSSDGLSLL
201: SCGYDCSSRL VDVEKGMETQ IFKEDQTVEV IRFHPDNSSL FLSGGSKGLL RLWDIRVGTV VKEYLKGLGP ILDVEFSLDG KNFLCSSDTT KSRISENSII
301: VWDVLRQVPL SNQVYTEAYT CTCVRYHPSD CCFVAQSNGN YIAIFSARPP FKMDKCKRYE MHGVCGFPIK CNFSLDGEQI ASGSSDGCIY FFSYKSSELL
401: RKVKAFDQAC IDVAFHPLMT DVVASCSWSG EISVFG

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.