CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25946	Soybean	nucleus	63.44	71.93
VIT_19s0014g04680.t01	Wine grape	cytosol	63.68	64.59
KRH55520	Soybean	extracellular	49.29	63.33
TraesCS2D01G060600.1	Wheat	plastid	49.53	60.52
HORVU2Hr1G011560.1	Barley	plastid	48.82	59.65
Solyc04g009360.2.1	Tomato	cytosol	60.85	59.17
PGSC0003DMT400082429	Potato	cytosol	60.85	59.17
GSMUA_Achr4P25600_001	Banana	cytosol	57.08	55.5
CDY43821	Canola	nucleus	57.31	54.98
Bra029021.1-P	Field mustard	nucleus	56.6	54.42
CDY43036	Canola	nucleus	56.6	53.93
AT5G54520.1	Thale cress	cytosol	57.78	53.61
Os02t0319800-01	Rice	cytosol	55.9	52.55
TraesCS2B01G074700.1	Wheat	nucleus	54.48	52.14
TraesCS2A01G061500.1	Wheat	nucleus	54.72	51.79
EES15688	Sorghum	cytosol	53.54	50.9
Zm00001d000074_P002	Maize	cytosol	53.3	50.79
Zm00001d000150_P001	Maize	cytosol	53.3	50.79
KRG92226	Soybean	nucleus	27.36	20.17
KRH34573	Soybean	nucleus	26.65	19.48

Protein Annotations

EntrezGene:100790592	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02012668	EnsemblPlantsGene:GLYMA_20G140800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7N3E5
EnsemblPlants:KRG91221	ProteinID:KRG91221	ProteinID:KRG91221.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44566	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295F72B	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:37952222..37962360

Molecular Weight (calculated)

46954.7 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.326

Length

424 amino acids

Sequence
(BLAST)

001: MDLLCNAYSN ASDDEEEEQP KRQRVSLSSP NPPKRHLPLS SPPSFNNQTQ APMLGRYISK RQRALMGSTP APLPEPVPVP SPFTLSGSIL DADIHHNILS
101: LLKSKAKGHQ SPNLISEKLS ATLYGHTKAV NAIHWSSSHA HLLASAGMDH AVCIWNVWSR NQKKACVLNF HNAAVKDVKW SQQGHFLLSC GYDCTSRLID
201: VEKGLETQVF REDQIVGVIK FHPDNSNLFL SGGSKGQVKL WDARTGKIVH NYNRNLGPIL DVEFTMNGKQ FISSSDVSQS NASENAIIVW DVSREIPLSN
301: QVYVEAYTCP CVRRHPFDST FVAQSNGNYV AIFTTNPPYR LNKCKRYEGH VVSGFPVKCN FSLDGKKLAS GSSDGSIYLY DYQSSKVVKK IKAHDQACID
401: VAFHPVIPNV IASCSWDGSI LVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.