Factsheet for PGSC0003DMT400082429

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009360.2.1	Tomato	cytosol	96.56	96.56
VIT_19s0014g04680.t01	Wine grape	cytosol	60.32	62.92
KRG91221	Soybean	nucleus	59.17	60.85
TraesCS2D01G060600.1	Wheat	plastid	45.41	57.06
HORVU2Hr1G011560.1	Barley	plastid	44.72	56.2
GSMUA_Achr4P25600_001	Banana	cytosol	55.5	55.5
Bra029021.1-P	Field mustard	nucleus	53.44	52.83
AT5G54520.1	Thale cress	cytosol	55.05	52.52
CDY43821	Canola	nucleus	53.21	52.49
CDY43036	Canola	nucleus	52.98	51.91
KRH25946	Soybean	nucleus	44.27	51.6
Os02t0319800-01	Rice	cytosol	52.52	50.78
TraesCS2B01G074700.1	Wheat	nucleus	50.23	49.44
Zm00001d000074_P002	Maize	cytosol	50.0	48.99
Zm00001d000150_P001	Maize	cytosol	50.0	48.99
TraesCS2A01G061500.1	Wheat	nucleus	50.23	48.88
EES15688	Sorghum	cytosol	49.31	48.21
KRH55520	Soybean	extracellular	36.47	48.18
PGSC0003DMT400078422	Potato	cytosol	12.84	19.18
PGSC0003DMT400057595	Potato	nucleus	24.54	18.45

Protein Annotations

EntrezGene:102598098	Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1D5X2	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400032540
PGSC:PGSC0003DMG400032540	EnsemblPlants:PGSC0003DMT400082429	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44566
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294F9A2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006359312.1	SEG:seg	:	:

Description

WD-40 repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400032540]

Coordinates

chr4:-:4936019..4943674

Molecular Weight (calculated)

48153.1 Da

IEP (calculated)

8.071

GRAVY (calculated)

-0.262

Length

436 amino acids

Sequence
(BLAST)

001: MDLLCKVYGG TSDEEDDNGG IHLQRPILPP PKRAKFENFH QVSNHLPLYK SNPSANLPAQ ASLPGRYISK RERAAMASVE KVPDLSTTIS PTSSPVLGSI
101: LDSVLPHNIL SALRDQTKVY GNMIHTPERL SVVLDGHKRS VNAVQWSTSH AHLLASAGMD QTVCIWNVWS RDQKKARVLN CHHAAVKDVK WSPYGLFVLS
201: CGYDCTSRLI DVEKGTETQV FNEDQVVGVV KFHPDNYNLF LSGGSKGHLK IWDIRAGKVV HQYVRNPDPI LDAEFTVDAK RIISSSDTSK SNISENSIMV
301: WDVSREIPLS NQVYGEAYTC PSISCHPSDP KFIAQSNGNY IAIFSTKPPF GLDKYRRYGG HSVSGFPIKC NFSLDGEKVI SGSSDGYIYV YDSNTCKLIR
401: KIKAYNEACI DVVFHPVMSN VVASCSWSGQ VSVAVT

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.