Factsheet for PGSC0003DMT400078422

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55054	Canola	cytosol	28.42	62.88
CDX93405	Canola	cytosol	28.42	53.21
Solyc02g078970.2.1	Tomato	nucleus	95.89	49.12
PGSC0003DMT400057595	Potato	nucleus	94.18	47.41
VIT_01s0026g00040.t01	Wine grape	nucleus	81.85	40.92
Bra019919.1-P	Field mustard	nucleus	76.03	39.29
KRG92226	Soybean	nucleus	76.71	38.96
AT1G10580.1	Thale cress	nucleus	76.03	38.74
KRH34573	Soybean	nucleus	76.37	38.45
GSMUA_Achr1P14840_001	Banana	nucleus	68.49	34.31
EER94734	Sorghum	nucleus	66.78	34.09
GSMUA_Achr3P00660_001	Banana	nucleus	68.49	34.07
TraesCS4D01G154600.2	Wheat	nucleus	66.44	34.04
TraesCS4A01G160700.1	Wheat	nucleus	66.44	34.04
Os03t0397500-01	Rice	nucleus	66.78	34.03
Zm00001d047245_P001	Maize	extracellular, plasma membrane	66.1	33.74
Zm00001d029435_P001	Maize	nucleus	65.75	33.63
TraesCS4B01G157400.1	Wheat	nucleus	65.41	33.39
HORVU4Hr1G039720.1	Barley	cytosol	65.41	31.68
PGSC0003DMT400082429	Potato	cytosol	19.18	12.84

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M1D028	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG402030529	PGSC:PGSC0003DMG402030529	EnsemblPlants:PGSC0003DMT400078422
InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002966BD6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402030529]

Coordinates

chr5:-:3465923..3468268

Molecular Weight (calculated)

33610.8 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.933

Length

292 amino acids

Sequence
(BLAST)

001: MKGCDAISVY NIPQHEQKKR KLEKKKEKME EEGDEQDVDM TEVDNPSTDM WLMKNRKSPW VGKKEGLQVE LSEEQKKYAE EYAKKKGEER GGDKDKAEPM
101: VEKSTFHGKE EKDYQGRFWI APPKDAKAAN DHCFIPKRLV HTWSGHTKGV SAIRFFPKHG HLILSAGMDT KVKIWDVYNS GKCMRTYMGH TKAVRDIWFS
201: NDGSKFLTAG YDKHIKYWDT ETGKVIQTFS TGKIPYVVRL NPDEDKQNVL LAGMSDKKIV QWDINSGQIT QEYDQHLGAV NTITFVDNNR GL

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.