Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55054 | Canola | cytosol | 21.82 | 94.7 |
| Bra019919.1-P | Field mustard | nucleus | 88.66 | 89.91 |
| CDX93405 | Canola | cytosol | 21.82 | 80.13 |
| VIT_01s0026g00040.t01 | Wine grape | nucleus | 81.5 | 79.97 |
| Solyc02g078970.2.1 | Tomato | nucleus | 79.23 | 79.65 |
| PGSC0003DMT400057595 | Potato | nucleus | 79.93 | 78.97 |
| KRG92226 | Soybean | nucleus | 76.96 | 76.7 |
| KRH34573 | Soybean | nucleus | 77.31 | 76.38 |
| PGSC0003DMT400078422 | Potato | cytosol | 38.74 | 76.03 |
| GSMUA_Achr3P00660_001 | Banana | nucleus | 76.44 | 74.62 |
| GSMUA_Achr1P14840_001 | Banana | nucleus | 75.74 | 74.44 |
| EER94734 | Sorghum | nucleus | 72.25 | 72.38 |
| Zm00001d047245_P001 | Maize | extracellular, plasma membrane | 71.9 | 72.03 |
| Zm00001d029435_P001 | Maize | nucleus | 71.73 | 71.98 |
| TraesCS4A01G160700.1 | Wheat | nucleus | 71.2 | 71.58 |
| Os03t0397500-01 | Rice | nucleus | 71.55 | 71.55 |
| TraesCS4D01G154600.2 | Wheat | nucleus | 71.03 | 71.4 |
| TraesCS4B01G157400.1 | Wheat | nucleus | 70.68 | 70.8 |
| HORVU4Hr1G039720.1 | Barley | cytosol | 69.98 | 66.5 |
| AT5G54520.1 | Thale cress | cytosol | 19.72 | 24.73 |
Protein Annotations
| MapMan:16.4.5.2.11 | Gene3D:2.130.10.10 | EntrezGene:837599 | UniProt:A4FVN8 | ProteinID:AEE28597.1 | ArrayExpress:AT1G10580 |
| EnsemblPlantsGene:AT1G10580 | RefSeq:AT1G10580 | TAIR:AT1G10580 | RefSeq:AT1G10580-TAIR-G | EnsemblPlants:AT1G10580.1 | TAIR:AT1G10580.1 |
| Unigene:At.14984 | EMBL:BT030336 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0071013 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_172528.2 | PFAM:PF00400 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00320 | InterPro:PRPF17 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR43979 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000196C11 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
Coordinates
chr1:-:3491258..3493834
Molecular Weight (calculated)
65131.4 Da
IEP (calculated)
7.078
GRAVY (calculated)
-0.779
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.