Factsheet for Bra019919.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55054	Canola	cytosol	23.36	100.0
AT1G10580.1	Thale cress	nucleus	89.91	88.66
CDX93405	Canola	cytosol	23.36	84.62
Solyc02g078970.2.1	Tomato	nucleus	80.0	79.3
VIT_01s0026g00040.t01	Wine grape	nucleus	81.59	78.94
PGSC0003DMT400057595	Potato	nucleus	80.18	78.1
KRG92226	Soybean	nucleus	77.52	76.17
PGSC0003DMT400078422	Potato	cytosol	39.29	76.03
KRH34573	Soybean	nucleus	77.88	75.86
GSMUA_Achr1P14840_001	Banana	nucleus	76.46	74.1
GSMUA_Achr3P00660_001	Banana	nucleus	76.64	73.76
Zm00001d029435_P001	Maize	nucleus	73.63	72.85
Zm00001d047245_P001	Maize	extracellular, plasma membrane	73.1	72.2
EER94734	Sorghum	nucleus	73.1	72.2
Os03t0397500-01	Rice	nucleus	72.92	71.9
TraesCS4A01G160700.1	Wheat	nucleus	71.15	70.53
TraesCS4D01G154600.2	Wheat	nucleus	70.97	70.35
TraesCS4B01G157400.1	Wheat	nucleus	70.44	69.58
HORVU4Hr1G039720.1	Barley	cytosol	70.09	65.67
Bra029021.1-P	Field mustard	nucleus	19.11	24.49

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra019919	EnsemblPlants:Bra019919.1	EnsemblPlants:Bra019919.1-P	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DTS6
PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253EA87	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA06:-:3713194..3714891

Molecular Weight (calculated)

63605.6 Da

IEP (calculated)

7.606

GRAVY (calculated)

-0.679

Length

565 amino acids

Sequence
(BLAST)

001: MDLIQSYDGG DASSSPEPSP PRMLKAKSSA PEVDDTALAL TVSNASQSKS NPINPTQHAV AFNPTYDQLW APIYGPAHPY AKDGIAQGMR NHKLGFVEDA
101: SIGSFVFDEQ YSTFQKYGYA ADPSGMNYVG DAEALKQNDG VSVYNIKQSD QKRRKLEESK GEEEVEIAAE AENPATEAWL LKNRKSPWSR KKEVVQGELT
201: EEQKKYAEDH AKKKEEKSQQ GEAKGEAFTD KSTFHGKEDK DYQGRSWIEA PKDAKANNDH CYIPKRLVHT WSGHTKGVSA IRFFPKHGHL LLSAGMDCKV
301: KIWDVYNSGK CMRTYMGHGK AVRDICFSND GTKFLTAGYD KNIKYWDTET GQVISTFSTG KIPYVVKLNP DDDKQNILLA GMSDKKIVQW DINSGEITQE
401: YDQHLGAVNT ITFVDNNRRF VTSSDDKSLR VWEFGIPVVI KYISEPHMHS MPAISVHPNG KWLAAQSLDN QILIYGTRER FQLNKKKRFA GHIVAGYACQ
501: VNFSPDGRFV MSGDGEGRCW FWDWKSCRVF KTLRCHNGVC IGAEWHPLEQ SKVATCGWDG LIKYW

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.