Factsheet for Bra029021.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43036	Canola	nucleus	96.6	95.73
AT5G54520.1	Thale cress	cytosol	78.91	76.15
VIT_19s0014g04680.t01	Wine grape	cytosol	56.92	60.05
TraesCS2D01G060600.1	Wheat	plastid	44.9	57.06
KRG91221	Soybean	nucleus	54.42	56.6
HORVU2Hr1G011560.1	Barley	plastid	43.99	55.91
GSMUA_Achr4P25600_001	Banana	cytosol	53.74	54.36
PGSC0003DMT400082429	Potato	cytosol	52.83	53.44
Solyc04g009360.2.1	Tomato	cytosol	52.61	53.21
Os02t0319800-01	Rice	cytosol	53.06	51.88
TraesCS2B01G074700.1	Wheat	nucleus	50.11	49.89
TraesCS2A01G061500.1	Wheat	nucleus	50.57	49.78
EES15688	Sorghum	cytosol	48.75	48.21
KRH55520	Soybean	extracellular	35.83	47.88
Zm00001d000150_P001	Maize	cytosol	48.07	47.64
Zm00001d000074_P002	Maize	cytosol	48.07	47.64
KRH25946	Soybean	nucleus	39.46	46.52
Bra019919.1-P	Field mustard	nucleus	24.49	19.11

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra029021	EnsemblPlants:Bra029021.1	EnsemblPlants:Bra029021.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4EJQ5
PFAM:PF00400	PFAM:PF08662	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44566
SMART:SM00320	SUPFAM:SSF50978	InterPro:TIF_beta_prop-like	UniParc:UPI000253FEF6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT5G54520 (E=1e-208) | WD-40 repeat family protein

Coordinates

chrA03:+:5902365..5903851

Molecular Weight (calculated)

48914.6 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.412

Length

441 amino acids

Sequence
(BLAST)

001: MDLLRNSYAN DSDDEPEPVT ENRLTSKTAT PSLPSKRPYP EPEERQYKPT RKPNPPYSSY SDPQTSSSTI PITFPGRYVS KRERSLLASL STAPPTQIQK
101: PSVNSPTVLG SISDSQVPRH VLSKGSSFRT GMPSRMSVSL TGHTKAVTSI DWSTSHVHLL ASAGLDGAVY VWNVWSSGEK KVRSFLHHNA PVKDVKWSKQ
201: GLSLLSCGYD CTSRLFDVER GVETQAFKED QVVGVVKFHP DNANLFLSGG LKGSLRLWDI RSNKVVHEYV KDLGPILDVE FMPGGKRFVS SSDVSGRNIS
301: ENAVIVWDVS REVPLSNQVY AEAYTCPCIK HHPRDSVFIA QSHGNYTAIF SANPPFKLNK YKRYEGHWVA GFPIKCNFSP DGETLVSGSS DGFIYVFGYK
401: STELIKKLKA YEHPCVDVAY HPVLPNVIAC CSWDGQVSVF E

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.