Factsheet for Os02t0319800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G060600.1	Wheat	plastid	61.2	79.54
HORVU2Hr1G011560.1	Barley	plastid	59.87	77.81
TraesCS2A01G061500.1	Wheat	nucleus	74.06	74.55
TraesCS2B01G074700.1	Wheat	nucleus	72.73	74.04
EES15688	Sorghum	cytosol	71.4	72.2
Zm00001d000150_P001	Maize	cytosol	71.18	72.13
Zm00001d000074_P002	Maize	cytosol	71.18	72.13
GSMUA_Achr4P25600_001	Banana	cytosol	57.87	59.86
VIT_19s0014g04680.t01	Wine grape	cytosol	54.55	58.85
KRG91221	Soybean	nucleus	52.55	55.9
Bra029021.1-P	Field mustard	nucleus	51.88	53.06
CDY43036	Canola	nucleus	52.11	52.81
PGSC0003DMT400082429	Potato	cytosol	50.78	52.52
Solyc04g009360.2.1	Tomato	cytosol	50.78	52.52
CDY43821	Canola	nucleus	51.44	52.49
AT5G54520.1	Thale cress	cytosol	51.66	50.98
KRH25946	Soybean	nucleus	38.8	46.79
KRH55520	Soybean	extracellular	33.48	45.76
Os03t0397500-01	Rice	nucleus	25.06	19.72

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4329163	EMBL:AK111750	ProteinID:BAD28954.1	ProteinID:BAF08596.1
ProteinID:BAS78370.1	ProteinID:EEE56852.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os02g0319800	EnsemblPlants:Os02t0319800-01	PFAM:PF00400	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44566	UniProt:Q6EQW6	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00003CE861
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015623001.1	RefSeq:XP_015623002.1
SEG:seg	:	:	:	:	:

Description

OsWD40-43WD40 repeat-like domain containing protein. (Os02t0319800-01)

Coordinates

chr2:-:12741615..12746536

Molecular Weight (calculated)

49183.9 Da

IEP (calculated)

8.247

GRAVY (calculated)

-0.290

Length

451 amino acids

Sequence
(BLAST)

001: MDLLSAAYGA TSDDDDDGAE ATPTPGWAAT GYASAAGPPP KRPRWEPPPY LPPPPPYPIP QPARPRAAPP PASTASGRYV SKRERALMAA SSSPVDSSSP
101: LPPSAAAQFG SPVVGSISDS NLRADIFHSL RCQTKPGSTR RMPLKLSVSL TGHTKAVNCV DWSQSHAHLL ASAGMDHTIH VFNVWNKGNT TARVFKFHTA
201: AVKDVRWSLN GLSLLSGGFD CSLRLVDVEE GKEIKVFKED QAVEVIKFNP SNSNLFLSGG SKGSLRLWDI RSGLVTKEYQ RNLGTILDIE FSSDGKQFIC
301: STDTSRSNVS ENSIIIWDTL RQVPLSNQVY TEAYTCPCVR YHPFEASFVA QSNGNYIAIF SAKSPFKLNK YMRYEGHGVW GFPIKCNFSF SGKELTSGSS
401: DGCIYFYDYK SSRLLSKIQA FKEPCTDVAY HPVIPNVIAS CSWAGEIAVF E

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.