Factsheet for Os03t0397500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047245_P001	Maize	extracellular, plasma membrane	91.1	91.26
EER94734	Sorghum	nucleus	90.92	91.08
TraesCS4D01G154600.2	Wheat	nucleus	90.58	91.05
Zm00001d029435_P001	Maize	nucleus	90.58	90.89
TraesCS4B01G157400.1	Wheat	nucleus	90.4	90.56
TraesCS4A01G160700.1	Wheat	nucleus	90.05	90.53
CDY55054	Canola	cytosol	19.9	86.36
HORVU4Hr1G039720.1	Barley	cytosol	89.18	84.74
CDX93405	Canola	cytosol	19.9	73.08
Bra019919.1-P	Field mustard	nucleus	71.9	72.92
VIT_01s0026g00040.t01	Wine grape	nucleus	74.0	72.6
GSMUA_Achr1P14840_001	Banana	nucleus	73.82	72.56
Solyc02g078970.2.1	Tomato	nucleus	71.73	72.11
KRG92226	Soybean	nucleus	72.08	71.83
KRH34573	Soybean	nucleus	72.6	71.72
GSMUA_Achr3P00660_001	Banana	nucleus	73.47	71.72
AT1G10580.1	Thale cress	nucleus	71.55	71.55
PGSC0003DMT400057595	Potato	nucleus	71.73	70.86
PGSC0003DMT400078422	Potato	cytosol	34.03	66.78
Os02t0319800-01	Rice	cytosol	19.72	25.06

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	EntrezGene:4333045	ProteinID:AAP12948.2	ProteinID:ABF96434.1	EMBL:AK073478
ProteinID:BAF12216.1	ProteinID:BAS84574.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlantsGene:Os03g0397500	EnsemblPlants:Os03t0397500-01	PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	UniProt:Q84MU4	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00004B24C9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_015632968.1	SEG:seg	:	:	:

Description

OsWD40-74WD40 repeat-like domain containing protein. (Os03t0397500-01)

Coordinates

chr3:+:16065907..16069194

Molecular Weight (calculated)

64261.2 Da

IEP (calculated)

6.818

GRAVY (calculated)

-0.649

Length

573 amino acids

Sequence
(BLAST)

001: MDLLQSSYTP DDEDDDEQQP LSSPDASPLR LPAKSAAPAV DDTALALSAA AASTSRPLDP SLHLVPFNPT ADQLWAPVLG PQHPHAPISS ASGNRNHKLG
101: HVEDAAVLPF LFDEQYNTFH RFGYAADPSG LHIVGDAQPS AEPDTVYNLA PSEHKRRRLQ SKDEEGANQE PLPPEAKNPA SDEWILRNKQ SPWAGKKEAP
201: PAELTEEQRQ YAEAHAAKKA EKEARGEGKG EKSDMVAKST FHGKEERDYQ GRSWITPPKD AKASNERCYI PKRCVHEWVG HTKGVSAIRF FPKYGHLLLS
301: ASMDCKIKIW DVLESRTCMR TYMGHSKAVR DISFSNDGTK FLSAGYDRNI QYWDTETGQV ISTFSTGKVP YVVKLNPDED KQHVLLAGMS DKKIVQWDMK
401: SGQITQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISLHPNSNWL AAQSLDNQIL IYSTKERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGSCWFWD WKSCRRFKTL KCHNGVCIGC EWHPLETSKV ATCGWDGVIK YWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.