Factsheet for Zm00001d047245_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94734	Sorghum	nucleus	98.25	98.25
Zm00001d029435_P001	Maize	nucleus	97.38	97.55
Os03t0397500-01	Rice	nucleus	91.26	91.1
TraesCS4D01G154600.2	Wheat	nucleus	90.03	90.35
TraesCS4A01G160700.1	Wheat	nucleus	89.51	89.82
TraesCS4B01G157400.1	Wheat	nucleus	89.69	89.69
CDY55054	Canola	cytosol	19.93	86.36
HORVU4Hr1G039720.1	Barley	cytosol	88.64	84.08
Bra019919.1-P	Field mustard	nucleus	72.2	73.1
CDX93405	Canola	cytosol	19.93	73.08
VIT_01s0026g00040.t01	Wine grape	nucleus	74.3	72.77
GSMUA_Achr1P14840_001	Banana	nucleus	73.78	72.38
Solyc02g078970.2.1	Tomato	nucleus	71.85	72.11
KRH34573	Soybean	nucleus	73.08	72.07
KRG92226	Soybean	nucleus	72.38	72.0
AT1G10580.1	Thale cress	nucleus	72.03	71.9
GSMUA_Achr3P00660_001	Banana	nucleus	73.78	71.89
PGSC0003DMT400057595	Potato	nucleus	71.85	70.86
PGSC0003DMT400078422	Potato	cytosol	33.74	66.1
Zm00001d000074_P002	Maize	cytosol	18.01	23.15
Zm00001d000150_P001	Maize	cytosol	18.01	23.15

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	ProteinID:AQL05970.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K7VKY1	PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000220E736	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d047245	EnsemblPlants:Zm00001d047245_P001	EnsemblPlants:Zm00001d047245_T001	SEG:seg	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr9:+:123896603..123902627

Molecular Weight (calculated)

63778.9 Da

IEP (calculated)

7.250

GRAVY (calculated)

-0.551

Length

572 amino acids

Sequence
(BLAST)

001: MDLLQSSYAP DDASSPEASA AASSPDSSPL RLPSKSAAPA VDDTALALSS AASAARPLDP SLHLVAFNPT ADQLWAPILG PQHPHAPISS ASGNRNHKLG
101: HVEDAAVLPF LFDEQYNTFH RFGYAADPSG LHIVGDAQPQ APEPDTVYNL APSEHKRRRL LAKADNEAEL APPEAKNPAS EEWILHNKQS PWAGKKEAPP
201: AELTDEQKQY AEAHAAKKAE KEARLEGKSE RTEVVVKTTF HGKEEKDYQG RSWITPPKDA KATNDHCYIP KRCVHEWVGH TKGVSAIRFF PKYGHLLLSA
301: SMDCKIKIWD VLGSRTCMRT YMGHSKAVRD ISFSNDGTKF LSAGYDRNIQ YWDTETGQVI STFSTGKVPY VVKLNPDEDK QHILLAGMSD KKIVQWDMKS
401: GQITQEYDQH LGAVNTITFV DNNRRFVTSS DDKSLRVWEF GIPVVIKYIS EPHMHSMPSM SLHPNSNWLA AQSLDNQILI YSTKERFQLN KKKRFAGHIV
501: AGYACQVNFS PDGRFVMSGD GEGSCWFWDW KSCRRFKTLK CHNGVCIGCE WHPLETSKVA TCGWDGVIKY WD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.