Factsheet for Solyc02g078970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057595	Potato	nucleus	97.89	96.21
PGSC0003DMT400078422	Potato	cytosol	49.12	95.89
CDY55054	Canola	cytosol	21.58	93.18
VIT_01s0026g00040.t01	Wine grape	nucleus	84.04	82.02
Bra019919.1-P	Field mustard	nucleus	79.3	80.0
AT1G10580.1	Thale cress	nucleus	79.65	79.23
CDX93405	Canola	cytosol	21.58	78.85
KRG92226	Soybean	nucleus	78.95	78.26
KRH34573	Soybean	nucleus	78.95	77.59
GSMUA_Achr1P14840_001	Banana	nucleus	75.79	74.1
GSMUA_Achr3P00660_001	Banana	nucleus	75.44	73.25
Zm00001d047245_P001	Maize	extracellular, plasma membrane	72.11	71.85
EER94734	Sorghum	nucleus	72.11	71.85
Os03t0397500-01	Rice	nucleus	72.11	71.73
TraesCS4D01G154600.2	Wheat	nucleus	71.4	71.4
Zm00001d029435_P001	Maize	nucleus	71.4	71.28
TraesCS4A01G160700.1	Wheat	nucleus	71.23	71.23
TraesCS4B01G157400.1	Wheat	nucleus	71.05	70.8
HORVU4Hr1G039720.1	Barley	cytosol	70.7	66.83
Solyc04g009360.2.1	Tomato	cytosol	18.95	24.77

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4B9C1	PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc02g078970.2	EnsemblPlants:Solyc02g078970.2.1	UniParc:UPI0002768690	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:43575980..43580346

Molecular Weight (calculated)

65053.6 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.728

Length

570 amino acids

Sequence
(BLAST)

001: MDLLQSSYED ESPDSSPIRM LPSKSAAPKV DDTMLALTVA GEAARAQSKP LDPTQHVVGF NPTYEQLWAP ICGPAHPYAK DGLAQGLRNH KLGFVEDASI
101: EPFVFDEQYN TFQKYGYAVD PSENSYIGDL EKMKECDAIS VYNIPQHEQK KRKLEKKKEK MEEEGDEQDV DMTEVENPST DTWLMKNRKS PWAGKKEGLQ
201: VELSEEQKKY AEEYAKKKGE ERGGDKDKAE PMVEKSTFHG KEEKDYQGRS WIAPPKDAKA ANDHCYIPKR LVHTWSGHTK GVSAIRFFPK HGHLILSAGM
301: DTKVKIWDVY NSGKCMRTYM GHTKAVRDIW FSNDGTKFLT AGYDKYIKYW DTETGQVIQT FTTGKIPYVV RLNPDEDKQN VLLAGMSDKK IVQWDINSGQ
401: ITQEYDQHLG AVNTITFVDN NRRFVTSSDD KSLRVWEYGI PVVIKYISEP HMHSMPSISP HPNGNWIAAQ SLDNQILIYS TRERFQLNKK KRFAGHIVAG
501: YACQVNFSPD GRFVFSGDGE GRCWFWDWKS CKVFRTLKCH DGVCIGAEWH PLEQSKVATC GWDGLIKYWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.