Factsheet for VIT_01s0026g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55054	Canola	cytosol	20.38	90.15
Solyc02g078970.2.1	Tomato	nucleus	82.02	84.04
PGSC0003DMT400057595	Potato	nucleus	81.68	82.24
PGSC0003DMT400078422	Potato	cytosol	40.92	81.85
Bra019919.1-P	Field mustard	nucleus	78.94	81.59
AT1G10580.1	Thale cress	nucleus	79.97	81.5
KRG92226	Soybean	nucleus	79.97	81.22
KRH34573	Soybean	nucleus	80.48	81.03
GSMUA_Achr1P14840_001	Banana	nucleus	77.57	77.7
GSMUA_Achr3P00660_001	Banana	nucleus	77.57	77.17
CDX93405	Canola	cytosol	20.38	76.28
Zm00001d047245_P001	Maize	extracellular, plasma membrane	72.77	74.3
EER94734	Sorghum	nucleus	72.6	74.13
Os03t0397500-01	Rice	nucleus	72.6	74.0
Zm00001d029435_P001	Maize	nucleus	71.92	73.56
TraesCS4A01G160700.1	Wheat	nucleus	71.4	73.16
TraesCS4D01G154600.2	Wheat	nucleus	71.23	72.98
TraesCS4B01G157400.1	Wheat	nucleus	70.89	72.38
HORVU4Hr1G039720.1	Barley	cytosol	70.21	67.99
VIT_19s0014g04680.t01	Wine grape	cytosol	18.66	26.08
VIT_05s0049g02190.t01	Wine grape	cytosol	6.34	14.23

Protein Annotations

EntrezGene:100260455	wikigene:100260455	MapMan:16.4.5.2.11	Gene3D:2.130.10.10	ProteinID:CCB56670	ProteinID:CCB56670.1
ncoils:Coil	UniProt:F6HPP2	EMBL:FN596002	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100260455	wikigene:LOC100260455	PFAM:PF00400	PRINTS:PR00320
InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002108E3F	ArrayExpress:VIT_01s0026g00040	EnsemblPlantsGene:VIT_01s0026g00040	EnsemblPlants:VIT_01s0026g00040.t01	unigene:Vvi.23632
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002262666
RefSeq:XP_002262666.1	RefSeq:XP_010653441.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:8670265..8675104

Molecular Weight (calculated)

66063.3 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.723

Length

584 amino acids

Sequence
(BLAST)

001: MDLLAKSYTA DDDDGPQHEA EDQNLDNSSP DSSPTRIALP SKSSAPKVDD TTLALAIANT NDKPIDPIQH VVPFNPTYDQ LWAPIYGPAH PYAKDGIAQG
101: MRNHKLGFVE NAAIEPFIFD EQYNTFHKYG YAADPSASAG NNYVGDLEAL EKNDGISVYN IPQHEQKKRK IEKKKESESE ENEDVDVEEV QNPATDTWLL
201: KNKKSPWAGK KEGLQTELTE EQKKYAEEYA KKKGEEKGAA EKGEFVTDKS TFHGKEERDY QGRSWIAPPK DAKATNDHCY IPKRLVHTWS GHTKGVSAIR
301: FFPKHGHLIL SAGMDTKVKI WDVFNSGKCM RTYMGHSKAV RDISFCNDGT KFLTAGYDKN IKYWDTETGQ VISTFSTGKI PYVVKLNPDD DKQNILLAGM
401: SDKKIVQWDM NTGQITQEYD QHLGAVNTIT FVDNNRRFVT SSDDKSLRVW EFGIPVVIKY ISEPHMHSMP SISLHPNTNW LAAQSLDNQI LIYSTRERFQ
501: LNKKKRFAGH IAAGYACQVN FSPDGRFVMS GDGEGKCWFW DWKSCKVFRT LKCHEGVCIG CEWHPLEQSK VATCGWDGLI KYWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.