Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g04680.t01 | Wine grape | cytosol | 28.85 | 17.94 |
| VIT_01s0026g00040.t01 | Wine grape | nucleus | 14.23 | 6.34 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | ProteinID:CCB48636 | ProteinID:CCB48636.1 | UniProt:F6H8U0 | EMBL:FN595496 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44566 | SUPFAM:SSF50978 | UniParc:UPI0002109031 |
| ArrayExpress:VIT_05s0049g02190 | EnsemblPlantsGene:VIT_05s0049g02190 | EnsemblPlants:VIT_05s0049g02190.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:9794335..9795674
Molecular Weight (calculated)
30631.9 Da
IEP (calculated)
10.373
GRAVY (calculated)
-0.273
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTEELAQAV STKMSFKNWK SEEAKVEPIR KLENLDSFFL AFLVSLPILK NHKKSVNTIP WSPTHAHRLA SARMDHIICI WNVWNRDQKE ACEFSYHNAA
101: VKDVRWRKQE QSSDSLKEFR QVKGIMMQIR INQAISQMMM NLIMPKPSRL SLKIHFQSLI HQKISLSNLN LTMILQGLPE RPQVCCYYLH ILWSRHCFIR
201: RLKKGAGGDM RRLFYWVAVH MNNEVMWEKW LPNMNVVLYI GTCASREVCR LLSKKMPELT
101: VKDVRWRKQE QSSDSLKEFR QVKGIMMQIR INQAISQMMM NLIMPKPSRL SLKIHFQSLI HQKISLSNLN LTMILQGLPE RPQVCCYYLH ILWSRHCFIR
201: RLKKGAGGDM RRLFYWVAVH MNNEVMWEKW LPNMNVVLYI GTCASREVCR LLSKKMPELT
001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.