Factsheet for VIT_19s0014g04680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91221	Soybean	nucleus	64.59	63.68
Solyc04g009360.2.1	Tomato	cytosol	62.92	60.32
PGSC0003DMT400082429	Potato	cytosol	62.92	60.32
TraesCS2D01G060600.1	Wheat	plastid	49.76	59.94
HORVU2Hr1G011560.1	Barley	plastid	49.28	59.37
GSMUA_Achr4P25600_001	Banana	cytosol	60.53	58.03
CDY43821	Canola	nucleus	60.77	57.47
Bra029021.1-P	Field mustard	nucleus	60.05	56.92
AT5G54520.1	Thale cress	cytosol	61.72	56.46
CDY43036	Canola	nucleus	59.33	55.73
Os02t0319800-01	Rice	cytosol	58.85	54.55
KRH25946	Soybean	nucleus	47.85	53.48
TraesCS2B01G074700.1	Wheat	nucleus	56.46	53.27
TraesCS2A01G061500.1	Wheat	nucleus	55.98	52.23
KRH55520	Soybean	extracellular	40.91	51.82
Zm00001d000074_P002	Maize	cytosol	55.02	51.69
Zm00001d000150_P001	Maize	cytosol	55.02	51.69
EES15688	Sorghum	cytosol	53.83	50.45
VIT_05s0049g02190.t01	Wine grape	cytosol	17.94	28.85
VIT_01s0026g00040.t01	Wine grape	nucleus	26.08	18.66

Protein Annotations

EntrezGene:100250407	wikigene:100250407	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM474945	ProteinID:CAN83694
ProteinID:CAN83694.1	ProteinID:CCB46450	ProteinID:CCB46450.1	UniProt:F6H2H0	EMBL:FN595229	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100250407
wikigene:LOC100250407	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44566
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001985548	ArrayExpress:VIT_19s0014g04680	EnsemblPlantsGene:VIT_19s0014g04680	EnsemblPlants:VIT_19s0014g04680.t01
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002280346
RefSeq:XP_002280346.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:4992180..5005708

Molecular Weight (calculated)

46316.0 Da

IEP (calculated)

7.666

GRAVY (calculated)

-0.300

Length

418 amino acids

Sequence
(BLAST)

001: MDLLCNAYST PSDDDDDEPR PVAEPTPPPL KRFKPQNPPL LPKPYPLIAG RYISKRERSL LSPALSPPLP NPAASASPVM GSISDSDLPR DILSSLRHQA
101: KGRSQLGRIS ERLSVDLKSH KKSVNTIQWS PTHAHLLASA GMDHAICIWN AWSRDQKKAR EFSYHNAAVK DVKWLQQGLS VLSCGYDCSS RLIDVEKGLQ
201: TQIFTEDQVV GVIKLHPDNS NLFLSGGSKG RLRLWDIRTG KVVHEYIRGL GPILDIEFTV NAKQFISSSD VSGSNMSENS IVVWDVSRQV PLSNQVYVEA
301: YTCPCIRCHP SDPFFIAQSN GNYIAIFSSC PPFKLDKYKR YENHGVSGFP IKCNFSLDGE KLASGSSDGC IYLYDYRSSE LVQKIKAYEQ ACIDVAFHPL
401: LPNVIAACGW DGAVSVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.