CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 1
extracellular 5
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91221	Soybean	nucleus	63.33	49.29
VIT_19s0014g04680.t01	Wine grape	cytosol	51.82	40.91
HORVU2Hr1G011560.1	Barley	plastid	42.73	40.63
TraesCS2D01G060600.1	Wheat	plastid	42.42	40.35
KRH25946	Soybean	nucleus	43.94	38.77
PGSC0003DMT400082429	Potato	cytosol	48.18	36.47
CDY43821	Canola	nucleus	48.79	36.43
Solyc04g009360.2.1	Tomato	cytosol	47.58	36.01
Bra029021.1-P	Field mustard	nucleus	47.88	35.83
CDY43036	Canola	nucleus	47.88	35.51
AT5G54520.1	Thale cress	cytosol	48.48	35.01
GSMUA_Achr4P25600_001	Banana	cytosol	45.45	34.4
Os02t0319800-01	Rice	cytosol	45.76	33.48
TraesCS2B01G074700.1	Wheat	nucleus	43.64	32.51
TraesCS2A01G061500.1	Wheat	nucleus	43.64	32.14
EES15688	Sorghum	cytosol	42.73	31.61
Zm00001d000150_P001	Maize	cytosol	42.42	31.46
Zm00001d000074_P002	Maize	cytosol	42.42	31.46
KRH34573	Soybean	nucleus	23.03	13.1
KRG92226	Soybean	nucleus	22.73	13.04

Protein Annotations

EMBL:ACUP02004016	EnsemblPlants:KRH55520	EnsemblPlantsGene:GLYMA_06G260700	EntrezGene:100800836	Gene3D:2.130.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR44566	PFAM:PF00400	ProteinID:KRH55520	ProteinID:KRH55520.1	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0006ED9347	UniProt:A0A0R0JLT4	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr6:+:44609748..44617167

Molecular Weight (calculated)

36644.7 Da

IEP (calculated)

5.762

GRAVY (calculated)

-0.076

Length

330 amino acids

Sequence
(BLAST)

001: MVGAFSQNIV TLTGLPMILL SESDLTNPLC GSILDADIHH NILSLLKSIA KGHQSPTLIS EKLCDSIWAY KSCQCYALVI NSFSPPCICW DGSCGLHMEC
101: MEQKSEESMP AKLPVFHNAA VKDVKWSQQG HFLLSCGYDC TSRLIDVEKG LETQVFRQDQ IVGVIKLHPD DSNLFLSEGS KGQIKLCDAR TGKVVHDYNQ
201: NLGLILDVEF TMNGKQFISS SDVSQSNASE NAIIVWDVSR EVPLSNQVYV EAYTCPCVSR HQFDSIFVSQ SNGNYVVIFT TTPPYRLNKY KQYEGHVVSG
301: FPIKCNFSLD GKKLASGSSD CSIYIYDYQL

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.