CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43036	Canola	nucleus	90.72	90.11
AT5G54520.1	Thale cress	cytosol	78.51	75.93
VIT_19s0014g04680.t01	Wine grape	cytosol	57.47	60.77
KRG91221	Soybean	nucleus	54.98	57.31
TraesCS2D01G060600.1	Wheat	plastid	44.8	57.06
HORVU2Hr1G011560.1	Barley	plastid	43.89	55.91
GSMUA_Achr4P25600_001	Banana	cytosol	53.17	53.9
PGSC0003DMT400082429	Potato	cytosol	52.49	53.21
Solyc04g009360.2.1	Tomato	cytosol	52.04	52.75
Os02t0319800-01	Rice	cytosol	52.49	51.44
TraesCS2B01G074700.1	Wheat	nucleus	49.55	49.44
TraesCS2A01G061500.1	Wheat	nucleus	50.0	49.33
EES15688	Sorghum	cytosol	49.55	49.1
KRH55520	Soybean	extracellular	36.43	48.79
Zm00001d000074_P002	Maize	cytosol	48.64	48.31
Zm00001d000150_P001	Maize	cytosol	48.64	48.31
KRH25946	Soybean	nucleus	39.59	46.79
CDY55054	Canola	cytosol	8.82	29.55
CDX93405	Canola	cytosol	8.82	25.0
CDY20619	Canola	extracellular	5.66	18.38
CDX93404	Canola	nucleus	4.07	12.16
CDY55055	Canola	nucleus	3.85	11.49

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078I1Y1	EnsemblPlants:CDY43821	ProteinID:CDY43821	ProteinID:CDY43821.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00077334001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44566
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE3B8C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC03g14540DBnaC03g14540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1Y1]

Coordinates

chrLK032569:+:74546..76036

Molecular Weight (calculated)

48814.3 Da

IEP (calculated)

8.033

GRAVY (calculated)

-0.440

Length

442 amino acids

Sequence
(BLAST)

001: MDLLRNSYAN DSDDEPEPVT DNRLTSKTAT PSLPSKRPYP EPEEQHYKPA RKPNPPYSSY SDPQTSSSAI PGRYVSKRER SLLASLSTAP TQNQSSDSIH
101: KPSVSSPTVL GSISDSQVPR HVLSKGSSFR TGMPSRMSVS LTGHTKAVTS IDWSTSHVHL LASAGLDGAV YVWNAWSSGE KKVRSFLHHN APVKDVKWSK
201: QGLSLLSCGY DCTSRLFDVE RGVETQAFKE DQVVGVVKFH PDNVNLFLSG GLKGSLRLWD IRSNKVVHEY VKDLGPILDV EFMAGGNRFI SSSDVSGRNI
301: SENAVIVWDV SREVPLSNQV YAEAYTCPCI KHHPKDSVFI AQSHGNYTAI FSANPPFKLN KYKRYEGHWV AGFPIKCNFS PDGETLISGS SDGSLYMYGY
401: KSTELIKKLK AYEHPCVDVA YHPVLPNVIA CCSWDGQVSV FE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.