CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55054	Canola	cytosol	84.62	100.0
PGSC0003DMT400078422	Potato	cytosol	53.21	28.42
Bra019919.1-P	Field mustard	nucleus	84.62	23.36
AT1G10580.1	Thale cress	nucleus	80.13	21.82
Solyc02g078970.2.1	Tomato	nucleus	78.85	21.58
PGSC0003DMT400057595	Potato	nucleus	78.21	21.03
VIT_01s0026g00040.t01	Wine grape	nucleus	76.28	20.38
KRG92226	Soybean	nucleus	75.0	20.35
Zm00001d029435_P001	Maize	nucleus	73.72	20.14
GSMUA_Achr1P14840_001	Banana	nucleus	75.0	20.07
KRH34573	Soybean	nucleus	74.36	20.0
GSMUA_Achr3P00660_001	Banana	nucleus	75.0	19.93
Zm00001d047245_P001	Maize	extracellular, plasma membrane	73.08	19.93
Os03t0397500-01	Rice	nucleus	73.08	19.9
TraesCS4A01G160700.1	Wheat	nucleus	72.44	19.82
TraesCS4D01G154600.2	Wheat	nucleus	72.44	19.82
EER94734	Sorghum	nucleus	72.44	19.76
TraesCS4B01G157400.1	Wheat	nucleus	72.44	19.76
HORVU4Hr1G039720.1	Barley	cytosol	72.44	18.74
CDY43036	Canola	nucleus	25.64	8.99
CDY43821	Canola	nucleus	25.0	8.82
CDY20619	Canola	extracellular	5.13	5.88
CDY55055	Canola	nucleus	3.85	4.05
CDX93404	Canola	nucleus	3.85	4.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	GO:A0A078DVL3	EnsemblPlants:CDX93405	ProteinID:CDX93405	ProteinID:CDX93405.1
GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0071013	EnsemblPlantsGene:GSBRNA2T00156064001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
InterPro:PRPF17	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EE13F9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA06g06430D

Coordinates

chrLK031876:+:63497..65142

Molecular Weight (calculated)

18061.4 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.493

Length

156 amino acids

Sequence
(BLAST)

001: MDCKVKIWDV YNSGKCMRTY MGHGKAVRDI CFSNDGTKFL TAGYDKNIKY WDTETGQKIV QWDINSGEIT QEYDQHLGAV NTITFVDNNR RFSCRVFKTL
101: RCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWINCRESTS QGSIRAYIRY RLYVAS

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.