CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55054	Canola	cytosol	5.88	6.06
CDY43036	Canola	nucleus	19.12	5.84
CDY43821	Canola	nucleus	18.38	5.66
CDX93405	Canola	cytosol	5.88	5.13
CDX93404	Canola	nucleus	2.21	2.03
CDY55055	Canola	nucleus	2.21	2.03

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	GO:A0A078G5J4	UniProt:A0A078G5J4	EnsemblPlants:CDY20619	ProteinID:CDY20619
ProteinID:CDY20619.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0071013	EnsemblPlantsGene:GSBRNA2T00012795001	InterPro:IPR015943	InterPro:PRPF17	PANTHER:PTHR43979
SUPFAM:SSF50978	SignalP:SignalP-noTM	UniParc:UPI0004EF4059	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf	:

Description

BnaC08g14390DBnaC08g14390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5J4]

Coordinates

chrLK032110:+:278708..279118

Molecular Weight (calculated)

15152.6 Da

IEP (calculated)

10.456

GRAVY (calculated)

0.138

Length

136 amino acids

Sequence
(BLAST)

001: MNSIWVRLIQ PLLWIITEGL SRQGDDKSLR VWEFGIPVVI KYISEPHVHS MPAVSVHPSG NWLAAQSLNN QILIYGTREM FQLSKKKRFA GHIVAGFGTG
101: RAVTSSGHLN VTMEYALELN GILWNRVKSV LVVGTA

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.