Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G154600.2 | Wheat | nucleus | 98.95 | 99.3 |
| TraesCS4A01G160700.1 | Wheat | nucleus | 98.78 | 99.12 |
| HORVU4Hr1G039720.1 | Barley | cytosol | 97.38 | 92.37 |
| Os03t0397500-01 | Rice | nucleus | 90.56 | 90.4 |
| EER94734 | Sorghum | nucleus | 90.21 | 90.21 |
| Zm00001d047245_P001 | Maize | extracellular, plasma membrane | 89.69 | 89.69 |
| Zm00001d029435_P001 | Maize | nucleus | 89.51 | 89.67 |
| CDY55054 | Canola | cytosol | 19.76 | 85.61 |
| CDX93405 | Canola | cytosol | 19.76 | 72.44 |
| Solyc02g078970.2.1 | Tomato | nucleus | 70.8 | 71.05 |
| VIT_01s0026g00040.t01 | Wine grape | nucleus | 72.38 | 70.89 |
| AT1G10580.1 | Thale cress | nucleus | 70.8 | 70.68 |
| GSMUA_Achr1P14840_001 | Banana | nucleus | 71.85 | 70.5 |
| Bra019919.1-P | Field mustard | nucleus | 69.58 | 70.44 |
| PGSC0003DMT400057595 | Potato | nucleus | 70.98 | 70.0 |
| KRH34573 | Soybean | nucleus | 70.8 | 69.83 |
| KRG92226 | Soybean | nucleus | 70.1 | 69.74 |
| GSMUA_Achr3P00660_001 | Banana | nucleus | 71.15 | 69.34 |
| PGSC0003DMT400078422 | Potato | cytosol | 33.39 | 65.41 |
| TraesCS2B01G074700.1 | Wheat | nucleus | 18.88 | 24.38 |
Protein Annotations
| MapMan:16.4.5.2.11 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0071013 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | InterPro:PRPF17 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR43979 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS4B01G157400 | EnsemblPlants:TraesCS4B01G157400.1 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:296294490..296298182
Molecular Weight (calculated)
64010.0 Da
IEP (calculated)
6.974
GRAVY (calculated)
-0.599
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLQSSYAP GDASSPEDES LSSPDTSPLR LPSKSAAPAV DETALALSAA AAAASTSRPL DPSLHLIPFN PTADQLWAPV LGPQHPHAPI SSASGHRNHK
101: LGHVEDAALL PFLFDEQYNT FHRFGYASDP SGLHIIGDAQ PQAPDLDTVY NLPPSEHKRR RIQSREENHE PLPPEAQNPA SDEWVVHNKQ SPWAGNREGP
201: PVELTDEQRQ YADAHAAKKA EKEARGEGKE KTEVVVKSTF HGKEEKDYQG RSWITPPKDA KATTERCYIP KRCVHEWVGH TKGVSAIRFS PKYGHLLLSA
301: SMDCKIKIWD VLESKTCMRT YMGHSKAVRD ISFSNDGSKF LSAGYDRNIQ YWDTETGQVI STFSTGKVPY VVKLNPDEDK QHILLAGMSD KKIVQWDMKS
401: GQITQEYDQH LGAVNTITFV DNNRRFVTSS DDKSLRVWEF GIPVVIKYIS EPHMHSMPSI AVHPNSNWLA AQSLDNQILI YSTKERFQLN KKKRFAGHIV
501: AGYACQVSFS PDGRFVMSGD GEGSCWFWDW KSCRRFKTLK CHNGVCIGCE WHPLETSKVA TCGWDGVIKY WD
101: LGHVEDAALL PFLFDEQYNT FHRFGYASDP SGLHIIGDAQ PQAPDLDTVY NLPPSEHKRR RIQSREENHE PLPPEAQNPA SDEWVVHNKQ SPWAGNREGP
201: PVELTDEQRQ YADAHAAKKA EKEARGEGKE KTEVVVKSTF HGKEEKDYQG RSWITPPKDA KATTERCYIP KRCVHEWVGH TKGVSAIRFS PKYGHLLLSA
301: SMDCKIKIWD VLESKTCMRT YMGHSKAVRD ISFSNDGSKF LSAGYDRNIQ YWDTETGQVI STFSTGKVPY VVKLNPDEDK QHILLAGMSD KKIVQWDMKS
401: GQITQEYDQH LGAVNTITFV DNNRRFVTSS DDKSLRVWEF GIPVVIKYIS EPHMHSMPSI AVHPNSNWLA AQSLDNQILI YSTKERFQLN KKKRFAGHIV
501: AGYACQVSFS PDGRFVMSGD GEGSCWFWDW KSCRRFKTLK CHNGVCIGCE WHPLETSKVA TCGWDGVIKY WD
001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD
Arabidopsis Description
At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.