Factsheet for TraesCS4D01G154600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G160700.1	Wheat	nucleus	99.12	99.12
TraesCS4B01G157400.1	Wheat	nucleus	99.3	98.95
HORVU4Hr1G039720.1	Barley	cytosol	98.07	92.7
Os03t0397500-01	Rice	nucleus	91.05	90.58
EER94734	Sorghum	nucleus	90.88	90.56
Zm00001d047245_P001	Maize	extracellular, plasma membrane	90.35	90.03
Zm00001d029435_P001	Maize	nucleus	90.18	90.02
CDY55054	Canola	cytosol	19.82	85.61
CDX93405	Canola	cytosol	19.82	72.44
Solyc02g078970.2.1	Tomato	nucleus	71.4	71.4
VIT_01s0026g00040.t01	Wine grape	nucleus	72.98	71.23
AT1G10580.1	Thale cress	nucleus	71.4	71.03
Bra019919.1-P	Field mustard	nucleus	70.35	70.97
GSMUA_Achr1P14840_001	Banana	nucleus	72.28	70.67
KRH34573	Soybean	nucleus	71.58	70.34
PGSC0003DMT400057595	Potato	nucleus	71.58	70.34
KRG92226	Soybean	nucleus	70.53	69.91
GSMUA_Achr3P00660_001	Banana	nucleus	71.58	69.51
PGSC0003DMT400078422	Potato	cytosol	34.04	66.44
TraesCS2D01G060600.1	Wheat	plastid	15.79	25.94

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4D01G154600	EnsemblPlants:TraesCS4D01G154600.2
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:204730568..204734237

Molecular Weight (calculated)

63969.0 Da

IEP (calculated)

6.974

GRAVY (calculated)

-0.606

Length

570 amino acids

Sequence
(BLAST)

001: MDLLQSSYAP GDASSPEDES LSSPDTSPLR LPSKSAAPAV DETALALSAA AASTSRPLDP SLHLIPFNPT ADQLWAPVLG PQHPHAPISS ASGHRNHKLG
101: HVEDAALLPF LFDEQYNTFH RFGYASDPSG LHIIGDAQPQ APDLDTVYNL PPSEHKRRRI QSREENHEPL PPEAQNPASD EWVVHNKQSP WAGNREGPPV
201: ELTDEQRQYA EAHAAKKAEK EARGEGKEKT EVVVKSTFHG KEEKDYQGRS WITPPKDAKA TNERCYIPKR CVHEWIGHTK GVSAIRFFPK YGHLLLSASM
301: DCKIKIWDVL ESKTCMRTYM GHSKAVRDIS FSNDGSKFLS AGYDRNIQYW DTETGQVIST FSTGKVPYVV KLNPDEDKQH ILLAGMSDKK IVQWDMKSGQ
401: ITQEYDQHLG AVNTITFVDN NRRFVTSSDD KSLRVWEFGI PVVIKYISEP HMHSMPSIAV HPNSNWLAAQ SLDNQILIYS TKERFQLNKK KRFAGHIVAG
501: YACQVSFSPD GRFVMSGDGE GSCWFWDWKS CRRFKTLKCH NGVCIGCEWH PLETSKVATC GWDGVIKYWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.