Factsheet for GSMUA_Achr3P00660_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14840_001	Banana	nucleus	89.1	89.71
CDY55054	Canola	cytosol	19.93	88.64
VIT_01s0026g00040.t01	Wine grape	nucleus	77.17	77.57
Bra019919.1-P	Field mustard	nucleus	73.76	76.64
AT1G10580.1	Thale cress	nucleus	74.62	76.44
KRG92226	Soybean	nucleus	74.45	76.0
KRH34573	Soybean	nucleus	74.62	75.52
Solyc02g078970.2.1	Tomato	nucleus	73.25	75.44
CDX93405	Canola	cytosol	19.93	75.0
PGSC0003DMT400057595	Potato	nucleus	73.94	74.83
Zm00001d047245_P001	Maize	extracellular, plasma membrane	71.89	73.78
EER94734	Sorghum	nucleus	71.72	73.6
Os03t0397500-01	Rice	nucleus	71.72	73.47
Zm00001d029435_P001	Maize	nucleus	71.21	73.2
TraesCS4D01G154600.2	Wheat	nucleus	69.51	71.58
TraesCS4A01G160700.1	Wheat	nucleus	69.17	71.23
TraesCS4B01G157400.1	Wheat	nucleus	69.34	71.15
PGSC0003DMT400078422	Potato	cytosol	34.07	68.49
HORVU4Hr1G039720.1	Barley	cytosol	68.65	66.83
GSMUA_Achr4P25600_001	Banana	cytosol	17.89	24.08

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	EnsemblPlantsGene:GSMUA_Achr3G00660_001
EnsemblPlants:GSMUA_Achr3P00660_001	EnsemblPlants:GSMUA_Achr3T00660_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0SAN4
PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR43979	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296AFB7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

Pre-mRNA-processing factor 17 [Source:GMGC_GENE;Acc:GSMUA_Achr3G00660_001]

Coordinates

chr3:-:514997..520211

Molecular Weight (calculated)

65905.9 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.750

Length

587 amino acids

Sequence
(BLAST)

001: MDLLRGYAQD DDDDDDGDGS EEGSRGEEVE REGEKPDPNA AAMEEEAEGA SSPDSSPPRL LAKSSAPRVD DTSLALAAAG SARALHRPLD PTQHAVTFNP
101: TYDQLWAPIH GPAHPFAKDG VAQGMRNHKL GFVEDAAIQP FLFDEQYNTY HKYGYATDPS GLSYVGDLET LTKNQALSVY NMPQQEQKRR RIQMKASGAE
201: EADNLAAGHE KEVGQGELTE EQKKYAEEHA EKKAEKERGE GRAGNKAEHM DKSTFHGKEE RDYQGRSWIE APKDAKAKND HCYIPKRWVH TWSGHTKGVA
301: AIRFFPKQGH LLLSAGMDSK VKIWDVFNSG KCMRTYMGHS KAVRDISFSN DGTKFLSAGY DKNIKYWDTE TGKVISTFST GKIPYVVKLN PDEDKQNILL
401: AGMSDKKIIQ WDMNSGTITQ EYDQHLGAVN TITFVDNNRR FVTSSDDKSL RVWEFGIPVV VKYISEPHMH SMPSISLHPN SNWLAAQSLD NQILIYGTKE
501: RFQLNKKKRF AGHIVAGYAC QVNFSPDGRF VLSGDGEGKC WFWDWKSCKV FRTLKCHEGV CIGCEWHPLE QSKVATCGWD GMIKYWD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.