CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047245_P001	Maize	extracellular, plasma membrane	98.25	98.25
Zm00001d029435_P001	Maize	nucleus	98.08	98.25
Os03t0397500-01	Rice	nucleus	91.08	90.92
TraesCS4D01G154600.2	Wheat	nucleus	90.56	90.88
TraesCS4A01G160700.1	Wheat	nucleus	90.03	90.35
TraesCS4B01G157400.1	Wheat	nucleus	90.21	90.21
CDY55054	Canola	cytosol	19.76	85.61
HORVU4Hr1G039720.1	Barley	cytosol	89.34	84.74
Bra019919.1-P	Field mustard	nucleus	72.2	73.1
VIT_01s0026g00040.t01	Wine grape	nucleus	74.13	72.6
CDX93405	Canola	cytosol	19.76	72.44
AT1G10580.1	Thale cress	nucleus	72.38	72.25
GSMUA_Achr1P14840_001	Banana	nucleus	73.6	72.21
Solyc02g078970.2.1	Tomato	nucleus	71.85	72.11
KRH34573	Soybean	nucleus	72.9	71.9
GSMUA_Achr3P00660_001	Banana	nucleus	73.6	71.72
KRG92226	Soybean	nucleus	71.85	71.48
PGSC0003DMT400057595	Potato	nucleus	72.38	71.38
PGSC0003DMT400078422	Potato	cytosol	34.09	66.78
EES15688	Sorghum	cytosol	18.53	23.77

Protein Annotations

MapMan:16.4.5.2.11	Gene3D:2.130.10.10	EntrezGene:8077090	UniProt:C5WXK8	EnsemblPlants:EER94734	ProteinID:EER94734
ProteinID:EER94734.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0071013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	InterPro:PRPF17	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR43979	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G346300	SUPFAM:SSF50978	unigene:Sbi.1305	UniParc:UPI0001A83287
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002467736.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:63570254..63573742

Molecular Weight (calculated)

63705.7 Da

IEP (calculated)

7.250

GRAVY (calculated)

-0.571

Length

572 amino acids

Sequence
(BLAST)

001: MDLLQSSYAP DGASSPEDSA AASSPDSSPL RLPSKSAAPA VDDTALALSS AASAARPLDP SLHLVAFNPT ADQLWAPILG PQHPHAPISS ASGNRNHKLG
101: HVEDAAVLPF LFDEQYNTFH RFGYAADPSG LHIVGDAQTQ APEPDTVYNL APSEHKRRRL LAKADNQEEP APPEAKNPAS EEWILHNKQS PWAGKKEAPP
201: AELTDEQKQY AEAHAAKKAE KEARGEGKSE RTEVVVKTTF HGKEEKDYQG RSWITPPKDA KATNDHCYIP KRCVHEWVGH TKGVSAIRFF PKYGHLLLSA
301: SMDCKIKIWD VLGSRTCMRT YMGHSKAVRD ISFSNDGSKF LSAGYDRNIQ YWDTETGQVI STFSTGKVPY VVKLNPDEDK QHILLAGMSD KKIVQWDMKS
401: GQITQEYDQH LGAVNTITFV DNNRRFVTSS DDKSLRVWEF GIPVVIKYIS EPHMHSMPSI ALHPNSNWLA AQSLDNQILI YSTKERFQLN KKKRFAGHIV
501: AGYACQVNFS PDGRFVMSGD GEGSCWFWDW KSCRRFKTLK CHNGVCIGCE WHPLETSKVA TCGWDGVIKY WD

Best Arabidopsis Sequence Match ( AT1G10580.1 )
(BLAST)

001: MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE
101: DASIGSFGFE EQYHTFHKCG YAADPSGMNY VGDVEAFKKN DGLSVFNIPQ SEQKRRKIER SKEEREGEEK KEEIEPEAEN PETEAWLRKN RKSPWSRKKE
201: VVQGELTEEQ KKYAEDHAKK KEEKGQQGET KGEHYADKST FHGKEEKDYQ GRSWIEAPKD AKANNDHCYI PKRLVHTWSG HTKGVSAIRF FPKQGHLLLS
301: AGMDCKVKIW DVYNSGKCMR TYMGHAKAVR DICFSNDGSK FLTAGYDKNI KYWDTETGQV ISTFSTGKIP YVVKLNPDDD KQNILLAGMS DKKIVQWDIN
401: TGEVTQEYDQ HLGAVNTITF VDNNRRFVTS SDDKSLRVWE FGIPVVIKYI SEPHMHSMPS ISVHPNGNWL AAQSLDNQIL IYSTRERFQL NKKKRFAGHI
501: VAGYACQVNF SPDGRFVMSG DGEGKCWFWD WKSCKVFRTL KCHNGVCIGA EWHPLEQSKV ATCGWDGLIK YWD

Arabidopsis Description

At1g10580 [Source:UniProtKB/TrEMBL;Acc:A4FVN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.