CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000150_P001	Maize	cytosol	88.12	88.31
Zm00001d000074_P002	Maize	cytosol	88.12	88.31
TraesCS2D01G060600.1	Wheat	plastid	63.0	80.98
HORVU2Hr1G011560.1	Barley	plastid	60.31	77.52
TraesCS2A01G061500.1	Wheat	nucleus	73.77	73.44
TraesCS2B01G074700.1	Wheat	nucleus	71.97	72.46
Os02t0319800-01	Rice	cytosol	72.2	71.4
GSMUA_Achr4P25600_001	Banana	cytosol	54.04	55.28
VIT_19s0014g04680.t01	Wine grape	cytosol	50.45	53.83
KRG91221	Soybean	nucleus	50.9	53.54
CDY43821	Canola	nucleus	49.1	49.55
Solyc04g009360.2.1	Tomato	cytosol	48.43	49.54
PGSC0003DMT400082429	Potato	cytosol	48.21	49.31
Bra029021.1-P	Field mustard	nucleus	48.21	48.75
CDY43036	Canola	nucleus	48.43	48.54
AT5G54520.1	Thale cress	cytosol	48.43	47.26
KRH25946	Soybean	nucleus	36.77	43.85
KRH55520	Soybean	extracellular	31.61	42.73
EER94734	Sorghum	nucleus	23.77	18.53

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:8066988	UniProt:C5YS43	EnsemblPlants:EES15688	ProteinID:EES15688
ProteinID:EES15688.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44566
SMART:SM00320	EnsemblPlantsGene:SORBI_3008G040100	SUPFAM:SSF50978	unigene:Sbi.5685	UniParc:UPI0001A885E3	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002441850.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:3882677..3888659

Molecular Weight (calculated)

49080.2 Da

IEP (calculated)

8.134

GRAVY (calculated)

-0.203

Length

446 amino acids

Sequence
(BLAST)

001: MDLLSAAYGA TSDDEDAADP PSSVPVATGS ASFAPPPLKR PRWESHQYLP PTHCFPQQPL LNTVTPLASP SSGRYVSKRE RALLASSQVH VESGSPLSPV
101: TRAEVYCAVG SINNTNLRAD ILHSLQCQPK PGPSTSFPLK LSVCLKGHTK AINCVDWSPS HGHLLASAGM DHKVHVWNVW DKGNTTARVL KHHTAAVKDV
201: RWSLHRPFLL SGGLDCSLQL VDVVEGKVMK VFKDDQAVEV IKFNPSNPDL FLSGGSKGSL RLWDIRCGLV TKEFQRSLGT ILDIDFSADG RQFISSTDTT
301: RSNISENTIV VWDVSRQVPL SNQVYTEAFT CPCVRYHPRE ASFVAQSNGN YIAIFSARPP FKLNKYMRFE GHGVWGFPVK CNFSLSGREL ASGSSDGCIY
401: FYDYKSARLL RKIEAFKEAC TDVVYHPVMP NVIASCSWSG EISVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.