Factsheet for TraesCS2A01G061500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G060600.1	Wheat	plastid	72.32	93.37
TraesCS2B01G074700.1	Wheat	nucleus	92.19	93.23
HORVU2Hr1G011560.1	Barley	plastid	69.42	89.63
Os02t0319800-01	Rice	cytosol	74.55	74.06
EES15688	Sorghum	cytosol	73.44	73.77
Zm00001d000150_P001	Maize	cytosol	72.99	73.48
Zm00001d000074_P002	Maize	cytosol	72.99	73.48
GSMUA_Achr4P25600_001	Banana	cytosol	55.8	57.34
VIT_19s0014g04680.t01	Wine grape	cytosol	52.23	55.98
KRG91221	Soybean	nucleus	51.79	54.72
Bra029021.1-P	Field mustard	nucleus	49.78	50.57
Solyc04g009360.2.1	Tomato	cytosol	49.11	50.46
PGSC0003DMT400082429	Potato	cytosol	48.88	50.23
CDY43036	Canola	nucleus	49.78	50.11
CDY43821	Canola	nucleus	49.33	50.0
AT5G54520.1	Thale cress	cytosol	50.67	49.67
KRH25946	Soybean	nucleus	37.95	45.45
KRH55520	Soybean	extracellular	32.14	43.64
TraesCS4A01G160700.1	Wheat	nucleus	23.66	18.6

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44566	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS2A01G061500	EnsemblPlants:TraesCS2A01G061500.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr2A:-:27544531..27547793

Molecular Weight (calculated)

49003.9 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.294

Length

448 amino acids

Sequence
(BLAST)

001: MDLLSAAYGA TSDDDADAAP PPSWSATALP SVAPPPPKRP RWESPPYPGY PPPPPLPSPR PAPPQAAPPP LAGRRYVSKR ERALLAASQP PVGSAALLPP
101: PVAPEFDSPV VGSFADSNIR ADVLHSLRCQ PKPGSNSSSP LKLSVSLMGH TKAVNCVDWS PSHGHLLASA GMDHTVRVWN VWNRGDTTAR VLKHHTAAVK
201: DVKWSHHRPF LLSGGLDCSS RLVDPEVGKE ITVFKEDQPV EVIKFSPSNS NLFLSGGSKG SLRLWDIRTG LTTKEFNRSL GTILDLDFSA DGKQFISSTD
301: TTRSNVSENT IIVWDILREV PLSNQVYTEA FTCPCVRYHP YEASFVAQSN GNYIAIFSAR PPFKLNRYRR FEGHGVWGFP IKCSFSLSGR ELASGSSDGC
401: IYFYDYKSSR FLRKIEAFKE ACTYVAYHPV LHNVIASCGW TGEISVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.