Factsheet for Solyc04g009360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082429	Potato	cytosol	96.56	96.56
VIT_19s0014g04680.t01	Wine grape	cytosol	60.32	62.92
KRG91221	Soybean	nucleus	59.17	60.85
TraesCS2D01G060600.1	Wheat	plastid	45.64	57.35
HORVU2Hr1G011560.1	Barley	plastid	44.95	56.48
GSMUA_Achr4P25600_001	Banana	cytosol	55.73	55.73
Bra029021.1-P	Field mustard	nucleus	53.21	52.61
AT5G54520.1	Thale cress	cytosol	54.59	52.08
CDY43821	Canola	nucleus	52.75	52.04
KRH25946	Soybean	nucleus	44.5	51.87
CDY43036	Canola	nucleus	52.52	51.46
Os02t0319800-01	Rice	cytosol	52.52	50.78
TraesCS2B01G074700.1	Wheat	nucleus	50.46	49.66
TraesCS2A01G061500.1	Wheat	nucleus	50.46	49.11
Zm00001d000150_P001	Maize	cytosol	49.77	48.76
Zm00001d000074_P002	Maize	cytosol	49.77	48.76
EES15688	Sorghum	cytosol	49.54	48.43
KRH55520	Soybean	extracellular	36.01	47.58
Solyc02g078970.2.1	Tomato	nucleus	24.77	18.95

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BP92	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44566	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc04g009360.2	EnsemblPlants:Solyc04g009360.2.1
UniParc:UPI00027657E7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:2793909..2799625

Molecular Weight (calculated)

48429.5 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.296

Length

436 amino acids

Sequence
(BLAST)

001: MDLLCKVYGG TSDEEDDNGG IHLQRPILPQ PKRAKFENFH QVGNHVPLYK PNPSTNLPAQ ASLPGRYISK RERAAMDSVE KVPDLSTTVS PNSSPVLGSI
101: LDSVLPHNIL SALRDQTKIY GNMIHTPERL SVVLDGHKRS VNAVQWSTSH AHLLVSAGMD QTVCIWNVWS RDQKKARVLN CHKAAVKDVK WSPYGLFVLS
201: CGYDCTSRLI DVEKGTETQV FNEDQVVGVV KFHPDNYNLF LSGGSKGHLK IWDIRAGKVV HQYVRNPDPI LDAEFTVDAK RIISSSDTSK SNISENSIMV
301: WDVSREIPLS NQVYCEAYTC PSIRCHPSDP KFIAQSNGNY IAIFSTKPPF GLDKYRRYEG HSVSGFPIKC NFSLDGDKVI SGSSDGYIYV YDSNTCKLIR
401: KIKAYNEACI DVVFHPVMSN VVASCSWSGQ VSVAVT

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.