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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 3
  • nucleus 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, extracellular, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:extracellular
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G060600.1 Wheat plastid 89.34 89.34
TraesCS2B01G074700.1 Wheat nucleus 88.76 69.53
TraesCS2A01G061500.1 Wheat nucleus 89.63 69.42
Zm00001d000150_P001 Maize cytosol 77.52 60.45
Zm00001d000074_P002 Maize cytosol 77.52 60.45
EES15688 Sorghum cytosol 77.52 60.31
Os02t0319800-01 Rice cytosol 77.81 59.87
GSMUA_Achr4P25600_001 Banana cytosol 63.69 50.69
VIT_19s0014g04680.t01 Wine grape cytosol 59.37 49.28
KRG91221 Soybean nucleus 59.65 48.82
Solyc04g009360.2.1 Tomato cytosol 56.48 44.95
PGSC0003DMT400082429 Potato cytosol 56.2 44.72
Bra029021.1-P Field mustard nucleus 55.91 43.99
CDY43821 Canola nucleus 55.91 43.89
KRH25946 Soybean nucleus 47.26 43.85
CDY43036 Canola nucleus 55.91 43.6
AT5G54520.1 Thale cress cytosol 57.06 43.33
KRH55520 Soybean extracellular 40.63 42.73
HORVU4Hr1G039720.1 Barley cytosol 24.5 14.1
Protein Annotations
Gene3D:2.130.10.10MapMan:35.1GO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:HORVU2Hr1G011560
EnsemblPlants:HORVU2Hr1G011560.1InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986UniProt:M0XAX1PFAM:PF00400
ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR44566SMART:SM00320SUPFAM:SSF50978
UniParc:UPI000296A51FInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sf
Description
No Description!
Coordinates
chrchr2H:+:23187650..23191402
Molecular Weight (calculated)
38853.0 Da
IEP (calculated)
7.930
GRAVY (calculated)
-0.194
Length
347 amino acids
Sequence
(BLAST)
001: MCSMLIITVV GSLTDSNIRD DILHSLRCQP KPGSTNGSPW KLSVSLTSHT RAVNSVDWSP SHGHLLASAG MDHTVRVWNV WNSENTTARV FKYHTAAVKD
101: VKWSHHRPFL LSGGLDCSSR LVDAEVGKEI TVFKEDQPVE VIKFIPSNSN LFLSGGTKGS LRLWDIRTGL TTKEFNRNLG TILDVEFGAD GKQFICSTDT
201: TRSNVSENTI IVWDILREVP LSNQVYTEAF TCPCVRYHPY EASFVAQSNG NYIAIFSARP PYKLDRYRRF EGHGVWGFPI KCSFSLSGRE LASGSSDGCI
301: YFYDYKSSRF LRKIEAFKEA CTYVSYHPVL PNVIASCGWT GEISVFE
Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)
001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.