Factsheet for TraesCS2D01G060600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G011560.1	Barley	plastid	89.34	89.34
TraesCS2B01G074700.1	Wheat	nucleus	92.51	72.46
TraesCS2A01G061500.1	Wheat	nucleus	93.37	72.32
Zm00001d000150_P001	Maize	cytosol	81.56	63.6
Zm00001d000074_P002	Maize	cytosol	81.56	63.6
EES15688	Sorghum	cytosol	80.98	63.0
Os02t0319800-01	Rice	cytosol	79.54	61.2
GSMUA_Achr4P25600_001	Banana	cytosol	63.4	50.46
VIT_19s0014g04680.t01	Wine grape	cytosol	59.94	49.76
KRG91221	Soybean	nucleus	60.52	49.53
Solyc04g009360.2.1	Tomato	cytosol	57.35	45.64
PGSC0003DMT400082429	Potato	cytosol	57.06	45.41
Bra029021.1-P	Field mustard	nucleus	57.06	44.9
CDY43821	Canola	nucleus	57.06	44.8
KRH25946	Soybean	nucleus	48.13	44.65
CDY43036	Canola	nucleus	57.06	44.49
AT5G54520.1	Thale cress	cytosol	58.21	44.2
KRH55520	Soybean	extracellular	40.35	42.42
TraesCS4D01G154600.2	Wheat	nucleus	25.94	15.79

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44566	SMART:SM00320	SUPFAM:SSF50978	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G060600	EnsemblPlants:TraesCS2D01G060600.1
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200

Description

No Description!

Coordinates

chr2D:-:25044189..25047298

Molecular Weight (calculated)

38684.8 Da

IEP (calculated)

8.352

GRAVY (calculated)

-0.182

Length

347 amino acids

Sequence
(BLAST)

001: MCSVLLIAVV GSFADSNVRA DILHYLRCQP KPGSNNSSPF KLSVSLMGHT KAVNCVDWSP SHGHLLASAG MDHTVRVWNV WNRGDTTARV LKHHTAAVKD
101: VKWSHHRPFL LSGGFDCSSR LVDAEEGKEI RVFKEDQPVE VVKFNPSNSN LFLSGGSKGS LRLWDIRTGL ATKEFNRSLG TILDLEFSAD GKQFISSTDT
201: TRSNVSENTI IVWDTLREVP LSNQVYTEAF TCPCVRYHPY EASFVAQSNG NYIAIFSARP PFKLNRYRRF EGHGVWGFPI KCSFSLSGRE LASGSSDGCI
301: YFYDYKSSRF LRKIEAFKEA CTCVAYHPVL PNVIAACGWT GEISVFE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.