Factsheet for TraesCS2B01G074700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G060600.1	Wheat	plastid	72.46	92.51
TraesCS2A01G061500.1	Wheat	nucleus	93.23	92.19
HORVU2Hr1G011560.1	Barley	plastid	69.53	88.76
Os02t0319800-01	Rice	cytosol	74.04	72.73
Zm00001d000150_P001	Maize	cytosol	72.46	72.13
Zm00001d000074_P002	Maize	cytosol	72.46	72.13
EES15688	Sorghum	cytosol	72.46	71.97
GSMUA_Achr4P25600_001	Banana	cytosol	56.21	57.11
VIT_19s0014g04680.t01	Wine grape	cytosol	53.27	56.46
KRG91221	Soybean	nucleus	52.14	54.48
Solyc04g009360.2.1	Tomato	cytosol	49.66	50.46
PGSC0003DMT400082429	Potato	cytosol	49.44	50.23
Bra029021.1-P	Field mustard	nucleus	49.89	50.11
AT5G54520.1	Thale cress	cytosol	51.47	49.89
CDY43036	Canola	nucleus	49.89	49.66
CDY43821	Canola	nucleus	49.44	49.55
KRH25946	Soybean	nucleus	38.15	45.19
KRH55520	Soybean	extracellular	32.51	43.64
TraesCS4B01G157400.1	Wheat	nucleus	24.38	18.88

Protein Annotations

EnsemblPlants:TraesCS2B01G074700.1	EnsemblPlantsGene:TraesCS2B01G074700	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR44566	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
ScanProsite:PS00678	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:35.1	:

Description

No Description!

Coordinates

chr2B:-:40510035..40513197

Molecular Weight (calculated)

48509.3 Da

IEP (calculated)

8.745

GRAVY (calculated)

-0.310

Length

443 amino acids

Sequence
(BLAST)

001: MDLLSAAYGA TSDDDADAAP APSWPASVAP PPPKRPRWES PPYPGYPPPP PLPTPRPAPP QAAPPLAGRR YVSKRERALL AASQPSVGSA APLPPLVAPE
101: SDSPVVGSFA DSNVRADILH SLRCQPKHGS NNSSPVKLSV SLMGHTKAVN CVDWSRSHGH LLASAGMDHT VRIWNVWNRG NTTARVLKHH TAAVKDVKWS
201: HHRPILLSGG LDCSSRLVDP EVGKEITVFK EDQPVEVIKF SPSNSNLFLS GGSKGSLRLW DIRTGLTTKE FNRSLGTILD LDFSADGKQF ISSTDTTRSN
301: VSENTIIVWD ILREVPLSNQ VYTEAFTCPC VRYHPYEASF VAQSNGNYIA IFSARPPFKL NRYRRFEGHG VWGFPIKCSF SLSGRELASG SSDGCIYFYD
401: YKSSRFLRKI EAFKEACTYV AYHPVLHNVI ASCGWTGEIS VLE

Best Arabidopsis Sequence Match ( AT5G54520.1 )
(BLAST)

001: MDLICNSYAN DSDDEPEPVT NERLTSKIAA APSIPSKRPY PVPEERQYKP PRRPYPPHGS YSESQTSSSF SIPVPVPVPV PGRYVSKRER SLLASLSTIP
101: TPDQSSDLSQ KPYSSPTVLG SISDSDVPRH VLSSVRHRPK GSSLQTEMPS RMSISLTGHT KAVTAIDWST SHVHLLASAG LDGAVYVWNV WSNDKKKVRA
201: FLHHNAPVKD VKWSKQGLSL LSCGYDCTSR LFDVERGVET QSFKEDEVVG VVKFHPDNCN VFLSGGSKGS LRLWDIRANK FVHEYVRDLG PILDVEFIAG
301: GKQFISSSDV SGRNISENAV IVWDISREVP LSNQVYVEAY TCPCIKRHPQ DPVFIAQSHG NYTAIFSTNP PFKLNKYKRF EGHWVAGFPI KCNFSPDGET
401: LASGSSDGSV YMYDYKSTAL IKKLKAYEQP CVNVSYHPVL PNVVAACSWN GQVSVFE

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0D3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.