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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • plastid 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g082100.2.1 Tomato nucleus 89.79 99.29
VIT_05s0102g00480.t01 Wine grape cytosol 83.39 87.71
PGSC0003DMT400069435 Potato mitochondrion 9.06 84.19
KRH13647 Soybean cytosol 84.22 83.88
KRH43818 Soybean nucleus 84.13 83.78
GSMUA_Achr3P29700_001 Banana cytosol 69.27 81.85
AT1G20960.1 Thale cress cytosol 81.14 81.25
Bra012260.1-P Field mustard cytosol 80.13 79.69
Bra022718.1-P Field mustard cytosol 79.99 79.48
CDX76355 Canola cytosol 47.06 78.87
CDY31854 Canola cytosol 11.78 78.77
CDY01343 Canola cytosol 11.73 78.46
CDY28773 Canola cytosol 11.73 78.46
CDY48646 Canola cytosol 11.73 78.46
Bra020835.1-P Field mustard cytosol 75.3 78.44
EER99779 Sorghum cytosol 77.41 77.13
Zm00001d022286_P003 Maize plastid 77.46 77.11
TraesCS6B01G034100.1 Wheat cytosol 76.82 76.64
TraesCS6A01G024900.1 Wheat nucleus 76.77 76.63
TraesCS6D01G028200.1 Wheat cytosol 76.68 76.43
AT2G42270.1 Thale cress cytosol 76.36 76.43
HORVU6Hr1G004350.3 Barley cytosol, mitochondrion, nucleus 76.72 76.16
EES04337 Sorghum cytosol 75.99 76.02
CDY48648 Canola nucleus 35.83 75.7
CDY31853 Canola nucleus 41.81 75.69
CDY01342 Canola cytosol 38.55 75.63
CDY22556 Canola cytosol 71.67 74.08
TraesCS7D01G199800.1 Wheat cytosol 51.84 72.94
CDY56796 Canola cytosol 30.5 72.46
TraesCS7B01G103700.1 Wheat cytosol 71.02 71.22
TraesCS7A01G238700.1 Wheat cytosol 69.14 71.16
Bra008413.1-P Field mustard cytosol 30.5 70.83
HORVU7Hr1G040480.2 Barley cytosol, mitochondrion 69.96 70.74
KXG37223 Sorghum cytosol 71.67 70.69
Os03t0743800-00 Rice nucleus 69.46 70.43
CDX76356 Canola nucleus 11.45 62.88
CDY22275 Canola cytosol, nucleus, plasma membrane 30.04 61.55
PGSC0003DMT400001251 Potato nucleus 4.0 31.3
PGSC0003DMT400037575 Potato cytosol, extracellular 1.7 23.12
PGSC0003DMT400053716 Potato cytosol, mitochondrion 0.74 21.33
PGSC0003DMT400052548 Potato cytosol 8.65 19.2
PGSC0003DMT400053368 Potato nucleus 8.74 19.15
PGSC0003DMT400035614 Potato cytosol 8.6 18.78
PGSC0003DMT400017202 Potato cytosol 1.06 16.31
PGSC0003DMT400058295 Potato plastid 8.1 15.22
PGSC0003DMT400053718 Potato cytosol 0.83 14.75
PGSC0003DMT400001255 Potato cytosol, mitochondrion 4.14 12.23
PGSC0003DMT400037571 Potato nucleus, plastid 2.44 9.67
Protein Annotations
Gene3D:1.10.10.2530Gene3D:1.10.150.20Gene3D:1.10.3380.10EntrezGene:102592348MapMan:16.4.7.1.4Gene3D:2.60.40.150
Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:C2_domain_sfncoils:CoilInterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005524InterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR014001InterPro:IPR035892InterPro:Ig_E-setUniProt:M1CZC1InterPro:P-loop_NTPase
PFAM:PF00270PFAM:PF00271PFAM:PF02889EnsemblPlantsGene:PGSC0003DMG400030366PGSC:PGSC0003DMG400030366EnsemblPlants:PGSC0003DMT400078069
PIRSF:PIRSF039073PFscan:PS51192PFscan:PS51194PANTHER:PTHR24075PANTHER:PTHR24075:SF5SMART:SM00382
SMART:SM00487SMART:SM00490SMART:SM00973SUPFAM:SSF158702SUPFAM:SSF46785SUPFAM:SSF52540
SUPFAM:SSF81296InterPro:Sec63-domUniParc:UPI000294AF1CInterPro:WH_DNA-bd_sfRefSeq:XP_006350847.1SEG:seg
Description
EMB1507 [Source:PGSC_GENE;Acc:PGSC0003DMG400030366]
Coordinates
chr6:+:57314827..57323565
Molecular Weight (calculated)
247205.0 Da
IEP (calculated)
5.501
GRAVY (calculated)
-0.363
Length
2174 amino acids
Sequence
(BLAST)
0001: MSNLGGGAEA HARFKQYEYR ANSSLVLTTD SRPRDTHEPS GEPESLYGKI DPKSFGDRAY KGRPPELDEK LQKARKKKER EPLVSEPTRQ SKKRRLQEES
0101: VLTSSEEGVY QPKTKETRAA YEAMLSLIQQ QLGGQPLNIV SGAADEMLAV LKNDNFKNPE KKKEIEKLLN PISNQVFDQL VSIGRLITDY QDGGDASASA
0201: AADGDDGLDD DVGVAVEFEE NEEEEEESDL DVVPDDEEED DDVMEASASG AMQMGSGIDD DEMRDADEGM ALNVQDIDAY WLQRKISQAY EQQIDPQQSQ
0301: KLAEEVLKIL AEGDDREVET KLLVHLQFDK FSLIKYLLRN RLKVVWCTRL ARAEDQENRK KIEEEMLGLG PDHVAILEQL HATRATAKER QKNLEKSIRE
0401: EARRLKDESG VDGDGERKAL VDRDLDNGWL MGQRQFLDLD SLAFQQGGLL MANKKCELPV GSYRNHKKGY EEVHVPALKP RPLDPGEELV KISSIPEWAR
0501: PAFSGMTQLN RVQSKVYETA LFSPENILLC APTGAGKTNV AMLTILQQIA LNRNEDDGTF NHNNYKIVYV APMKALVAEV VGNLSKRLEH YGVTVKELSG
0601: DQTLTRQQIE ETQIIVTTPE KWDIITRKSG DRTYTQLVKL LIIDEIHLLH DNRGPVLESI IARTIRQIET TKEHIRLVGL SATLPNYEDV AVFLRVDLKK
0701: GLFHFDNSYR PVPLAQQYIG ITVKKPLQRF QLMNDVCYEK VISIAGKHQV LIFVHSRKET SKTARAIRDT ALANDTLGKF LKEDSLTREL LQSQTELVKS
0801: NDLKDLLPYG FAIHHAGMVR TDRQLVEDLF ADGHVQVLVS TATLAWGVNL PAHTVIIKGT QIYNPEKGAW TELSPLDVMQ MLGRAGRPQY DTYGEGIILT
0901: GHSELQYYLS LMNQQLPIES QFISKLADQL NAEIVLGTVL NAKEACKWLL YTYLYVRMVR NPTLYGLPAD ALKTDYALEE RRADLVHSAA ILLDKNNLVK
1001: YDRKSGYFQV TDLGRIASYY YITHGTISTY NEHLKPTMGD IELCRLFSLS EEFKYVTVRQ DEKMELAKLL DRVPIPIKES LEEPSAKINV LLQAYISRLK
1101: LEGLSLSSDM VYITQSAARL MRALFEIVLK RGWAQLAEKA LKWCKMISKR MWSVQTPLRQ FHGIPNEILM KLEKKDLAWE RYYDLSSQEL GELIRFPKMG
1201: RTLHKFIHQF PKLNLAAHVQ PITRSVLRVE LTITPDFQWE DKVHGYVEPF WIIVEDNDGE FILHHEYFML KKQYIDEDHT LNFTVPIYEP LPPQYFIRVV
1301: SDKWLGSQTV LPVSFRHLIL PEKYPPPTEL LDLQPLPVTA LRNPAYEALY QDFKHFNPVQ TQVFTVLYNS DDNVLVAAPT GSGKTICAEF AILRNHQKGP
1401: DSTIRAVYIA PLEALAKERF NDWKTKFGDH LGMRVVELTG ETASDLKLLE KGQLIISTPE KWDALSRRWK QRKHVQQVSL FIIDELHLIG GQGGPILEVI
1501: VSRMRYISSQ VENKIRIVAL STSLANAKDL GEWIGATSHG LFNFPPGVRP VPLEIHIQGV DIANFEARMQ AMTKPTYTAI VQHARKGKPA LVYVPTRKHA
1601: RLTAVDLMTY SSMDSEDTPI FLLRSAEELE PFVERINEPM LQETLKYGVG YLHEGLSATD QDIVKTLFET GWIQVCVMNG TMCWGVPLSA HLVVVMGTQY
1701: YDGRENAHTD YPVTDLLQMM GHASRPLVDS SGKCVILCHA PRKDYYKKFL YEAFPVESHL QHYLHDNLNA EVVVGVIQNK QDAVDYLTWT FMYRRLTQNP
1801: NYYNLQGVSH RHLSDQLSEL VENTISDLEA SKCVTIEDEF LLSPLNLGMI ASYYYISYTT IERFSSSVTS KTKLKGLLEI LASASEFEQL PIRPGEEELI
1901: RRLINHLRFS FENPKYTDPH VKANALLQAH FSRQMVGGNL ASDQQEVLLS ATRLLQAMVD VISSNGWLSL ALLTMEVSQM VTQGMWERDS MLLQLPHFTK
2001: ELAKKCQENP GRSIETVFDL VEMEDDERRE LLQMSDLQLL DIARFCNRFP NIDLTYDVLD SDNVSAGDDV SVQVTLERDL EGRTEVGPVF APRYPKTKEE
2101: GWWLVVGDTK SNQLLAIKRV TLQRKSKVKL DFAAPAEAGT RNYTLYFMCD SYLGCDQEYN FTLDVKEAMA EDDS
Best Arabidopsis Sequence Match ( AT1G20960.1 )
(BLAST)
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.