Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20960.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G20960.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G20960.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G20960.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76356 | Canola | nucleus | 28.18 | 73.23 |
| CDY56796 | Canola | cytosol | 61.9 | 69.62 |
| CDY22275 | Canola | cytosol, nucleus, plasma membrane | 52.58 | 50.99 |
| CDY01342 | Canola | cytosol | 48.4 | 44.95 |
| CDY31853 | Canola | nucleus | 51.9 | 44.46 |
| TraesCS7D01G199800.1 | Wheat | cytosol | 64.24 | 42.78 |
| AT1G20960.1 | Thale cress | cytosol | 87.76 | 41.59 |
| Solyc06g082100.2.1 | Tomato | nucleus | 75.61 | 39.57 |
| GSMUA_Achr3P29700_001 | Banana | cytosol | 68.42 | 38.26 |
| KRH13647 | Soybean | cytosol | 76.48 | 36.05 |
| KRH43818 | Soybean | nucleus | 76.19 | 35.91 |
| PGSC0003DMT400078069 | Potato | cytosol | 75.7 | 35.83 |
| VIT_05s0102g00480.t01 | Wine grape | cytosol | 71.23 | 35.46 |
| CDY22556 | Canola | cytosol | 72.01 | 35.24 |
| Zm00001d022286_P003 | Maize | plastid | 72.3 | 34.07 |
| EER99779 | Sorghum | cytosol | 72.21 | 34.05 |
| CDX76355 | Canola | cytosol | 42.66 | 33.85 |
| TraesCS6B01G034100.1 | Wheat | cytosol | 71.43 | 33.73 |
| TraesCS6A01G024900.1 | Wheat | nucleus | 71.23 | 33.65 |
| TraesCS6D01G028200.1 | Wheat | cytosol | 71.23 | 33.61 |
| HORVU6Hr1G004350.3 | Barley | cytosol, mitochondrion, nucleus | 71.43 | 33.56 |
| EES04337 | Sorghum | cytosol | 69.58 | 32.95 |
| Solyc06g071620.2.1 | Tomato | nucleus | 63.27 | 32.32 |
| TraesCS7A01G238700.1 | Wheat | cytosol | 64.24 | 31.3 |
| KXG37223 | Sorghum | cytosol | 66.47 | 31.03 |
| TraesCS7B01G103700.1 | Wheat | cytosol | 65.01 | 30.86 |
| HORVU7Hr1G040480.2 | Barley | cytosol, mitochondrion | 63.27 | 30.28 |
| Os03t0743800-00 | Rice | nucleus | 62.59 | 30.04 |
| CDY47017 | Canola | cytosol | 32.26 | 27.55 |
| CDY42855 | Canola | nucleus, plastid | 32.85 | 15.94 |
| CDY49767 | Canola | nucleus | 16.52 | 15.03 |
| CDY03992 | Canola | nucleus | 16.52 | 14.98 |
| CDY45149 | Canola | nucleus | 4.76 | 12.96 |
| CDX99082 | Canola | cytosol | 13.12 | 11.3 |
| CDY41593 | Canola | cytosol | 10.59 | 11.0 |
| CDY44724 | Canola | cytosol | 10.5 | 10.93 |
| CDY51662 | Canola | nucleus | 7.77 | 10.42 |
| CDX86107 | Canola | nucleus | 13.61 | 10.41 |
| CDY30903 | Canola | nucleus | 9.82 | 10.23 |
| CDY65064 | Canola | nucleus | 9.72 | 10.09 |
| CDY11624 | Canola | plastid | 10.59 | 9.46 |
| CDY38782 | Canola | plastid | 10.59 | 9.36 |
| CDY45148 | Canola | endoplasmic reticulum | 4.96 | 8.2 |
| CDY23339 | Canola | nucleus | 15.84 | 8.11 |
| CDY51661 | Canola | nucleus | 12.05 | 7.97 |
| CDX75273 | Canola | nucleus | 15.55 | 7.96 |
| CDX68881 | Canola | nucleus | 15.74 | 7.8 |
| CDY04587 | Canola | plastid | 2.43 | 6.83 |
| CDY52687 | Canola | cytosol, mitochondrion | 4.28 | 5.13 |
| CDY33604 | Canola | cytosol | 0.58 | 2.04 |
| CDY31854 | Canola | cytosol | 0.1 | 0.31 |
| CDY01343 | Canola | cytosol | 0.1 | 0.31 |
| CDY28773 | Canola | cytosol | 0.1 | 0.31 |
| CDY48646 | Canola | cytosol | 0.1 | 0.31 |
| CDY47018 | Canola | cytosol | 0.19 | 0.28 |
| Solyc06g065300.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| CDX75272 | Canola | nucleus | 0.0 | 0.0 |
| CDX68879 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.3380.10 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078IHQ6 | UniProt:A0A078IHQ6 |
| InterPro:AAA+_ATPase | EnsemblPlants:CDY48648 | ProteinID:CDY48648 | ProteinID:CDY48648.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00091425001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF02889 | PFscan:PS51192 | PANTHER:PTHR24075 | PANTHER:PTHR24075:SF5 | SMART:SM00382 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF46785 | SUPFAM:SSF52540 |
| InterPro:Sec63-dom | UniParc:UPI0004EDD17D | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
BnaCnng16670DBnaCnng16670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHQ6]
Coordinates
chrLK032784:-:83854..91969
Molecular Weight (calculated)
115596.0 Da
IEP (calculated)
4.920
GRAVY (calculated)
-0.489
Length
1029 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTKLEQRGLL RVHKEIFRER ERTCQVDHRM MANLGGGAEA HARFKQYEYR ANSSLVLTSE NRPRDTHEPT GEPETLWGKI DPKSFGDRVA KGRPQELDDK
0101: LKKSKKKGRD AVADDTASAR QSKRRRLREE SVLTDTDDVV YQPKTKETRA AYEAMLSLIQ QQLGGLPLNV VSGAADEILA VLKNDAVKNS DKKAEIQKLL
0201: NPAPDQIHQV FDQLVSIGKL ITDFQEGGDS GGGKANVDEG LDDDDVGVAV EFEDNEEDGE ESDPDMVQEE DDEEDDEPQK TGGMQVDAGI NEEDAGDANE
0301: GTSLNVLDID AYWLQRKISH AYEQQIDPQQ CQVLAEELLK ILAEGDDRDV ENKLLMHLQA EDQEEKNRIE DEMRGLGLAA IVDQLHSTRA TAKEREENVQ
0401: KSINEEARRL KDETVGDGGR GRRDVTDKDS ESGWLKGQRQ MLDLESLAFD QGGLLMANKK CDLPAGSYRT HGKGYDEVHV PWVSKKVDIS EKLVKITEMP
0501: DWAQPAFKGM QQLNRVQSKV YDTALFKADN ILLCAPTGAG KTNVAMLTIL QQIESSRNED GTLNHGKYKI VYVAPMKALV AEVVSNLSNR LKDYGLVRLL
0601: IIDEIHLLHD NRGPVLESIV ARTLRQIETT KENIRLVGLS ATLPNYEDVA LFLRETAKTA QAISQIELIK NVDLKNLLPY GFAIHHAGLT RGDREIVEAL
0701: FGEGHVQVLV STATLAWGVN LPAHTVIIKG TQVYNPEKGA WMELSPLDVM QMLGRAGRPQ YDEYGEGIII TGYSELQYYL SLMNEQLPIE SQFISKLADQ
0801: LNAEIVLGTV QNAKEACHWL GYTYLYIRMV RNPTLYGLAP DALVKDVVLE ERRADLIHSA ATILDKNNLI KYDRKSGYFQ VTDLGRIASY YYISHGTIAT
0901: YNEHLKPTMG DIDLYRLFSL SEEFKYVTVR QDEKMELAKL LDRVPIPIKE TLEEPSAKIN VLLQAYISQL KLEGLSLTSD MVYITQSAGR LVRALYEIVL
1001: KRGWAQLAEK ALNLSKMVGK RMWISWNSQ
0101: LKKSKKKGRD AVADDTASAR QSKRRRLREE SVLTDTDDVV YQPKTKETRA AYEAMLSLIQ QQLGGLPLNV VSGAADEILA VLKNDAVKNS DKKAEIQKLL
0201: NPAPDQIHQV FDQLVSIGKL ITDFQEGGDS GGGKANVDEG LDDDDVGVAV EFEDNEEDGE ESDPDMVQEE DDEEDDEPQK TGGMQVDAGI NEEDAGDANE
0301: GTSLNVLDID AYWLQRKISH AYEQQIDPQQ CQVLAEELLK ILAEGDDRDV ENKLLMHLQA EDQEEKNRIE DEMRGLGLAA IVDQLHSTRA TAKEREENVQ
0401: KSINEEARRL KDETVGDGGR GRRDVTDKDS ESGWLKGQRQ MLDLESLAFD QGGLLMANKK CDLPAGSYRT HGKGYDEVHV PWVSKKVDIS EKLVKITEMP
0501: DWAQPAFKGM QQLNRVQSKV YDTALFKADN ILLCAPTGAG KTNVAMLTIL QQIESSRNED GTLNHGKYKI VYVAPMKALV AEVVSNLSNR LKDYGLVRLL
0601: IIDEIHLLHD NRGPVLESIV ARTLRQIETT KENIRLVGLS ATLPNYEDVA LFLRETAKTA QAISQIELIK NVDLKNLLPY GFAIHHAGLT RGDREIVEAL
0701: FGEGHVQVLV STATLAWGVN LPAHTVIIKG TQVYNPEKGA WMELSPLDVM QMLGRAGRPQ YDEYGEGIII TGYSELQYYL SLMNEQLPIE SQFISKLADQ
0801: LNAEIVLGTV QNAKEACHWL GYTYLYIRMV RNPTLYGLAP DALVKDVVLE ERRADLIHSA ATILDKNNLI KYDRKSGYFQ VTDLGRIASY YYISHGTIAT
0901: YNEHLKPTMG DIDLYRLFSL SEEFKYVTVR QDEKMELAKL LDRVPIPIKE TLEEPSAKIN VLLQAYISQL KLEGLSLTSD MVYITQSAGR LVRALYEIVL
1001: KRGWAQLAEK ALNLSKMVGK RMWISWNSQ
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.