Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS1A01G221900.1 | |
TraesCS1B01G235100.2 | |
TraesCS1D01G223600.2 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G20960.1 | TraesCS1A01G221900.1 | AT5G05410.1 | 18552202 |
AT1G20960.1 | TraesCS1B01G235100.2 | AT5G05410.1 | 18552202 |
AT1G20960.1 | TraesCS1D01G223600.2 | AT5G05410.1 | 18552202 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G238700.1 | Wheat | cytosol | 94.63 | 69.22 |
TraesCS7B01G103700.1 | Wheat | cytosol | 95.86 | 68.31 |
HORVU7Hr1G040480.2 | Barley | cytosol, mitochondrion | 93.27 | 67.02 |
CDY48648 | Canola | nucleus | 42.78 | 64.24 |
CDY56796 | Canola | cytosol | 37.99 | 64.15 |
Bra008413.1-P | Field mustard | cytosol | 37.99 | 62.71 |
TraesCS6D01G028200.1 | Wheat | cytosol | 84.08 | 59.56 |
EER99779 | Sorghum | cytosol | 83.82 | 59.35 |
Zm00001d022286_P003 | Maize | plastid | 83.82 | 59.29 |
EES04337 | Sorghum | cytosol | 81.68 | 58.08 |
Solyc06g082100.2.1 | Tomato | nucleus | 72.75 | 57.17 |
Os03t0743800-00 | Rice | nucleus | 76.12 | 54.85 |
CDY01342 | Canola | cytosol | 39.22 | 54.69 |
KXG37223 | Sorghum | cytosol | 77.86 | 54.58 |
GSMUA_Achr3P29700_001 | Banana | cytosol | 64.98 | 54.57 |
CDY31853 | Canola | nucleus | 41.1 | 52.87 |
KRH43818 | Soybean | nucleus | 73.4 | 51.95 |
KRH13647 | Soybean | cytosol | 73.33 | 51.9 |
PGSC0003DMT400078069 | Potato | cytosol | 72.94 | 51.84 |
VIT_05s0102g00480.t01 | Wine grape | cytosol | 69.06 | 51.62 |
CDX76356 | Canola | nucleus | 12.82 | 50.0 |
Solyc06g071620.2.1 | Tomato | nucleus | 65.11 | 49.95 |
AT1G20960.1 | Thale cress | cytosol | 69.77 | 49.65 |
Bra012260.1-P | Field mustard | cytosol | 69.64 | 49.22 |
Bra020835.1-P | Field mustard | cytosol | 66.47 | 49.21 |
Bra022718.1-P | Field mustard | cytosol | 69.64 | 49.18 |
CDY22275 | Canola | cytosol, nucleus, plasma membrane | 33.53 | 48.82 |
AT2G42270.1 | Thale cress | cytosol | 67.44 | 47.97 |
CDX76355 | Canola | cytosol | 40.06 | 47.73 |
CDY22556 | Canola | cytosol | 63.88 | 46.93 |
CDY52687 | Canola | cytosol, mitochondrion | 17.35 | 31.24 |
TraesCS4D01G247100.1 | Wheat | mitochondrion, peroxisome | 36.76 | 27.33 |
TraesCS4D01G171000.1 | Wheat | nucleus | 13.98 | 17.58 |
TraesCS7D01G010500.1 | Wheat | cytosol | 9.39 | 14.68 |
TraesCS2D01G159900.1 | Wheat | cytosol | 9.26 | 14.21 |
TraesCS4D01G091400.1 | Wheat | cytosol | 9.13 | 13.93 |
Solyc06g065300.2.1 | Tomato | cytosol | 4.85 | 11.38 |
TraesCS6D01G291500.1 | Wheat | plastid | 8.35 | 10.95 |
TraesCS1D01G324400.1 | Wheat | plastid | 13.72 | 10.28 |
CDY04587 | Canola | plastid | 2.14 | 9.02 |
CDY31854 | Canola | cytosol | 0.13 | 0.62 |
CDY01343 | Canola | cytosol | 0.13 | 0.62 |
CDY28773 | Canola | cytosol | 0.13 | 0.62 |
CDY48646 | Canola | cytosol | 0.13 | 0.62 |
PGSC0003DMT400069435 | Potato | mitochondrion | 0.0 | 0.0 |
Protein Annotations
Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | Gene3D:2.60.40.150 | Gene3D:3.40.50.300 | MapMan:35.1 |
InterPro:AAA+_ATPase | InterPro:C2_domain_sf | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
InterPro:IPR014001 | InterPro:IPR035892 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF02889 |
PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24075 | PANTHER:PTHR24075:SF5 | SMART:SM00382 | SMART:SM00487 |
SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF46785 | SUPFAM:SSF52540 | InterPro:Sec63-dom |
EnsemblPlantsGene:TraesCS7D01G199800 | EnsemblPlants:TraesCS7D01G199800.1 | InterPro:WH_DNA-bd_sf | TIGR:cd00046 | TIGR:cd00079 | SEG:seg |
Description
No Description!
Coordinates
chr7D:-:156794774..156800534
Molecular Weight (calculated)
175480.0 Da
IEP (calculated)
6.697
GRAVY (calculated)
-0.381
Length
1545 amino acids
Sequence
(BLAST)
(BLAST)
0001: MESPGGGADA RARSRQYDYG ANSNLVVNTG SRPRDAHHEP TGEPQTLSGR IRARSFGDRA VRTRPPGLEE KRGESRGKKA RDAASADLPH RDAKRVRRGS
0101: VRPEDNVLSL AHDALYKPRT RETRTAYEAL LSVIQRQLGG QPLDVLGDAA DEVLAALKDD RIRNPDKKKV IEKLINPVSG QMFHQLVSIG KLITDFHDSA
0201: GVPSGDGTDM PFDDDIGITV EFEEDEDDKE HNLYQVQDEL DGENEDDLVE LNVPGTMQTG GELYDDDLQS CNKDLTLDVQ DIDAYWLQRK ISQAYEDIDP
0301: QHSQKLAEEI LKVIAEGDDR DVENRLVTLL DYKNFDLIKL LLHNRLKIVW CTFLARAEDQ EQRKKIAEEM MSNPRLAPIL EQLHATRASA KERQKNLERS
0401: IRDEAKRLLK NNSAGTDGAR DSKAVDIKSG WFKGQRQLLD LDNLSFHQGS LLMSNKKCEL PPGSFRTPQR GYEEVHVPAL RPMPYESAEK IVKISDMPEW
0501: ARPAFAGMTQ LNRVQSKVYD TALYKPDNIL LCAPTGAGKT NVAVLTILQQ IGLHMKDGEF DNTKYKIVYV APMKALVAEV VGNLSARLKE YNVTVSELSG
0601: DQNLTKQQID ETQIIVTTPE KWDIVTRKSG DRIYTQLVKL LIIDEIHLLH DNRGPVLESI VSRTVRQIEM TREHIRLVGL SATLPNYEDI AVFLRVCSGG
0701: LFHFDNSYRP CPLAQQYIGI TARKPLQRFQ LMNEICYEKV MAAAGKHQVL IFVHSRKETA QTARAIRDTA LANDVLARFL KDDSASQEIL CAHAELVKSS
0801: DLKDLLPYGF AIHHAGLARV DRELVEKLFV DKHIQVLIST ATLAWGVNLP AHTVIIKGTQ IYNSEKGAWT ELSPLDVMQM LGRAGRPQYD THGEGIILTS
0901: HSELQYYLSL MNQQLPIESQ FISKLADQLN AEIVLGTIQN AQEACSWLGY TYLYIRMLRN PTLYGLPEDI MERDRTLDER RADLVHSAAN LLDRNNLKYD
1001: KRTGYFQATD LGSYISHRTI STYNEYLKPT MGYIELCQLF SLSEEFKYVS VRKDEKMELE KILDRVPIPV KESLEEPSTK INVLLQAYIS GLKLEGLSLG
1101: SDMVYIKQSA GRLSRAIFEI VLKRGWSQLA EKALNLCTMI DKQMWSVQTP LRQFPGIPNE ILMKLEKKEL AWERYFDLSS QEIGELIRYP KMGRRLYQCI
1201: HQLPKLNLSA HVQPITRTVL GFELTLTPDF QWDDKIHGYV EPFWILVEDN DSECILHHEY FTLKKQRLNE DHTLNFTVPI YEPLPPLYFI HVVSDKWLGS
1301: RTILPVSFRH LVLPDKHAPP TELLDLQPLP VTALRNARYE GLYSAWKHFN PIQTQVFSVL YNSDHSVLVA APTGSGKTIC AEFAILRNHQ KAVSGETNMR
1401: IVYIAPIEAL AKERYRDWEM KFGEFACVVE LTGETARDLK LLDKGEIIIS THEKWDSLSR RWKQRKHIQQ VGLFIVDELH LIGSEKGHVL DIIVSRMRCI
1501: ANHTCSNIRI VALSASLANA KDLGEWIGAT SHGLFNFPPA VRRYL
0101: VRPEDNVLSL AHDALYKPRT RETRTAYEAL LSVIQRQLGG QPLDVLGDAA DEVLAALKDD RIRNPDKKKV IEKLINPVSG QMFHQLVSIG KLITDFHDSA
0201: GVPSGDGTDM PFDDDIGITV EFEEDEDDKE HNLYQVQDEL DGENEDDLVE LNVPGTMQTG GELYDDDLQS CNKDLTLDVQ DIDAYWLQRK ISQAYEDIDP
0301: QHSQKLAEEI LKVIAEGDDR DVENRLVTLL DYKNFDLIKL LLHNRLKIVW CTFLARAEDQ EQRKKIAEEM MSNPRLAPIL EQLHATRASA KERQKNLERS
0401: IRDEAKRLLK NNSAGTDGAR DSKAVDIKSG WFKGQRQLLD LDNLSFHQGS LLMSNKKCEL PPGSFRTPQR GYEEVHVPAL RPMPYESAEK IVKISDMPEW
0501: ARPAFAGMTQ LNRVQSKVYD TALYKPDNIL LCAPTGAGKT NVAVLTILQQ IGLHMKDGEF DNTKYKIVYV APMKALVAEV VGNLSARLKE YNVTVSELSG
0601: DQNLTKQQID ETQIIVTTPE KWDIVTRKSG DRIYTQLVKL LIIDEIHLLH DNRGPVLESI VSRTVRQIEM TREHIRLVGL SATLPNYEDI AVFLRVCSGG
0701: LFHFDNSYRP CPLAQQYIGI TARKPLQRFQ LMNEICYEKV MAAAGKHQVL IFVHSRKETA QTARAIRDTA LANDVLARFL KDDSASQEIL CAHAELVKSS
0801: DLKDLLPYGF AIHHAGLARV DRELVEKLFV DKHIQVLIST ATLAWGVNLP AHTVIIKGTQ IYNSEKGAWT ELSPLDVMQM LGRAGRPQYD THGEGIILTS
0901: HSELQYYLSL MNQQLPIESQ FISKLADQLN AEIVLGTIQN AQEACSWLGY TYLYIRMLRN PTLYGLPEDI MERDRTLDER RADLVHSAAN LLDRNNLKYD
1001: KRTGYFQATD LGSYISHRTI STYNEYLKPT MGYIELCQLF SLSEEFKYVS VRKDEKMELE KILDRVPIPV KESLEEPSTK INVLLQAYIS GLKLEGLSLG
1101: SDMVYIKQSA GRLSRAIFEI VLKRGWSQLA EKALNLCTMI DKQMWSVQTP LRQFPGIPNE ILMKLEKKEL AWERYFDLSS QEIGELIRYP KMGRRLYQCI
1201: HQLPKLNLSA HVQPITRTVL GFELTLTPDF QWDDKIHGYV EPFWILVEDN DSECILHHEY FTLKKQRLNE DHTLNFTVPI YEPLPPLYFI HVVSDKWLGS
1301: RTILPVSFRH LVLPDKHAPP TELLDLQPLP VTALRNARYE GLYSAWKHFN PIQTQVFSVL YNSDHSVLVA APTGSGKTIC AEFAILRNHQ KAVSGETNMR
1401: IVYIAPIEAL AKERYRDWEM KFGEFACVVE LTGETARDLK LLDKGEIIIS THEKWDSLSR RWKQRKHIQQ VGLFIVDELH LIGSEKGHVL DIIVSRMRCI
1501: ANHTCSNIRI VALSASLANA KDLGEWIGAT SHGLFNFPPA VRRYL
0001: MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA KGRPQELEDK LKKSKKKERD VVDDMVNIRQ SKRRRLREES
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
0101: VLTDTDDAVY QPKTKETRAA YEAMLGLIQK QLGGQPPSIV SGAADEILAV LKNDAFRNPE KKMEIEKLLN KIENHEFDQL VSIGKLITDF QEGGDSGGGR
0201: ANDDEGLDDD LGVAVEFEEN EEDDEESDPD MVEEDDDEED DEPTRTGGMQ VDAGINDEDA GDANEGTNLN VQDIDAYWLQ RKISQAYEQQ IDPQQCQVLA
0301: EELLKILAEG DDRVVEDKLL MHLQYEKFSL VKFLLRNRLK VVWCTRLARA EDQEERNRIE EEMRGLGPEL TAIVEQLHAT RATAKEREEN LQKSINEEAR
0401: RLKDETGGDG GRGRRDVADR DSESGWVKGQ RQMLDLESLA FDQGGLLMAN KKCDLPPGSY RSHGKGYDEV HVPWVSKKVD RNEKLVKITE MPDWAQPAFK
0501: GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT
0601: GREIEETQII VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI RLVGLSATLP NYEDVALFLR VDLKKGLFKF
0701: DRSYRPVPLH QQYIGISVKK PLQRFQLMND LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE DIVKNSDLKD
0801: ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL
0901: QYYLSLMNEQ LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMVRNPTLY GLAPDALAKD VVLEERRADL IHSAATILDK NNLVKYDRKS
1001: GYFQVTDLGR IASYYYITHG TIATYNEHLK PTMGDIDLYR LFSLSDEFKY VTVRQDEKME LAKLLDRVPI PIKETLEEPS AKINVLLQAY ISQLKLEGLS
1101: LTSDMVYITQ SAGRLVRALY EIVLKRGWAQ LAEKALNLSK MVGKRMWSVQ TPLRQFHGLS NDILMQLEKK DLVWERYYDL SAQELGELIR SPKMGKPLHK
1201: FIHQFPKVTL SAHVQPITRT VLNVELTVTP DFLWDEKIHK YVEPFWIIVE DNDGEKILHH EYFLLKKQYI DEDHTLHFTV PIFEPLPPQY FVRVVSDKWL
1301: GSETVLPVSF RHLILPEKYP PPTELLDLQP LPVTALRNPN YEILYQDFKH FNPVQTQVFT VLYNTNDNVL VAAPTGSGKT ICAEFAILRN HHEGPDATMR
1401: VVYIAPLEAI AKEQFRIWEG KFGKGLGLRV VELTGETALD LKLLEKGQII ISTPEKWDAL SRRWKQRKYV QQVSLFIVDE LHLIGGQHGP VLEVIVSRMR
1501: YISSQVINKI RIVALSTSLA NAKDLGEWIG ASSHGLFNFP PGVRPVPLEI HIQGVDISSF EARMQAMTKP TYTAIVQHAK NKKPAIVFVP TRKHVRLTAV
1601: DLMAYSHMDN PQSPDFLLGK LEELDPFVEQ IREETLKETL CHGIGYLHEG LSSLDQEIVT QLFEAGRIQV CVMSSSLCWG TPLTAHLVVV MGTQYYDGRE
1701: NSHSDYPVPD LLQMMGRASR PLLDNAGKCV IFCHAPRKEY YKKFLYEAFP VESQLQHFLH DNFNAEVVAG VIENKQDAVD YLTWTFMYRR LPQNPNYYNL
1801: QGVSHRHLSD HLSELVENTL SDLEASKCIE VEDEMELSPL NLGMIASYYY ISYTTIERFS SLLSSKTKMK GLLEILTSAS EYDMIPIRPG EEDTVRRLIN
1901: HQRFSFENPK CTDPHVKANA LLQAHFSRQN IGGNLAMDQR DVLLSATRLL QAMVDVISSN GWLNLALLAM EVSQMVTQGM WERDSMLLQL PHFTKDLAKR
2001: CQENPGKNIE TVFDLVEMED EERQELLKMS DAQLLDIARF CNRFPNIDLT YEIVGSEEVN PGKEVTLQVM LERDMEGRTE VGPVDSLRYP KTKEEGWWLV
2101: VGDTKTNQLL AIKRVSLQRK VKVKLDFTAP SEPGEKSYTL YFMCDSYLGC DQEYSFSVDV KGSGAGDRME E
Arabidopsis Description
BRR2ADExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.