Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G168700.1 | Wheat | nucleus | 98.13 | 94.15 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 97.4 | 93.44 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 83.24 | 91.18 |
| Os02t0617500-01 | Rice | cytosol | 45.4 | 89.57 |
| OQU85316 | Sorghum | nucleus | 75.75 | 71.89 |
| Zm00001d051111_P001 | Maize | nucleus | 74.78 | 71.08 |
| PGSC0003DMT400001251 | Potato | nucleus | 15.62 | 69.06 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 53.21 | 59.24 |
| CDY49767 | Canola | nucleus | 51.59 | 56.06 |
| Bra033025.1-P | Field mustard | nucleus | 49.72 | 55.85 |
| CDY03992 | Canola | nucleus | 51.42 | 55.68 |
| AT3G27730.2 | Thale cress | nucleus | 50.12 | 53.89 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 52.07 | 53.78 |
| Solyc02g086580.2.1 | Tomato | cytosol | 51.91 | 52.99 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 54.27 | 52.31 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 23.03 | 38.45 |
| TraesCS7D01G199800.1 | Wheat | cytosol | 17.58 | 13.98 |
| TraesCS2D01G159900.1 | Wheat | cytosol | 11.39 | 13.92 |
| TraesCS4D01G091400.1 | Wheat | cytosol | 11.39 | 13.83 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 11.07 | 13.77 |
| TraesCS6D01G291500.1 | Wheat | plastid | 10.82 | 11.29 |
| TraesCS4D01G247100.1 | Wheat | mitochondrion, peroxisome | 18.63 | 11.02 |
| TraesCS6D01G028200.1 | Wheat | cytosol | 19.45 | 10.96 |
| TraesCS1D01G324400.1 | Wheat | plastid | 16.68 | 9.94 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 | SUPFAM:SSF52540 | InterPro:Sec63-dom | EnsemblPlantsGene:TraesCS4D01G171000 |
| EnsemblPlants:TraesCS4D01G171000.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4D:+:297776811..297787458
Molecular Weight (calculated)
137371.0 Da
IEP (calculated)
8.512
GRAVY (calculated)
-0.322
Length
1229 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGPLGDSYAL RCVSDLPPPF RPVFGFRYFN SLQSECFPVC FLSDVNMVVS APTGSGKTVL FELCILRLLS RFLTTDWRFN LLKGTQKTIY IAPMKALVQE
0101: KMRDWKVKLG SLGINCLEMT GDSEFFNKKA IHDSDLILTT PEKFDSMSRH GVRDGGLGFF SDIALVLIDE VHLLNDPRGA ALEAVVSRIK MLSRLGNMKS
0201: APLANVRFIA VSATISNAED IAEWLLAPPE GIKRFGEEMR PVKLTTKVLG YAPAKNDFLF ERRLQSFIFD ILMQHSRGKS ALVFCSTRKG AQEAAQCLSQ
0301: TAGSLGYSNP FMKSMQQYEH LREASLTCSD KQLQSCIVHG VGFHNGGLCL KDRSLVEGLF LKGDLQILCT TNTLAHGINL PAHTVVIKST QFFNKEKGSY
0401: VEYERSMVLQ MCGRAGRPPF DDTGTVVIMT RRETVHLYEN LLSGCEMVES QLLPCAVEHL NAEIVQLTVS DITLAIEWLK CSYLYIRIKK NPEHYGIKRG
0501: IPRDLLEKQM RDICVEKIHE LGEYGLIWTD GDGFSLKPLE PGRLMTKFYL KFDTMKLIVK ASACCSLEDL LHIICRSAEI SWIQLRRNEK KTLNDINSDK
0601: EGRLRFHVVS ENGKKKKRIQ TREDKIFVLV NDCLTGDPLM HDLSLNQETN SICSNGCRIA KCMKEYFIYK RSYRSAINSM LLAKCLDQKL WESSVFLLKQ
0701: LPGIGIVTAK ALKTAGVDSF ESLATADARK LESATGRNYP FGNQIKESLS SLPPKIDIQI EDAGNKQGKS TITVTLSRQS QAVRSKAREF SSPYSVKLLV
0801: PCPQSARVTL KVDLIFEEHV GIDIHKKHVV SREDDFHVTK AYGTEKQKPL ISLPADICLV SSRTAETSSA QPHIGRSPLS KEVCVIEDDD DANVPDKVDN
0901: MPGTRTFNNL ASLEVPSFDL MLEEDNGDMQ DVLFPEPTKA ECRSATSNTI FDHIRKKSRD FPTLMLSKSM DSSYEPLILK KMKTSRGQFN LDQGILHANE
1001: VTPMDSEHSE LRVSPTNTAE KCRRILSRTS EKSRSLFAEK VYSPFEKSKS LSRIPDENSV QFAVRTDSLS EKTKILWTAA DENSQQFGGK RDSPSEKSKI
1101: LMRPPDDGTL QFAGRRGSPS EKSNVLSRTP DENSLQFAAK RDSSSAKSNV LSKTPDMDSA QFAGRRGNPS EKNKLCSSSP FPDFQAMRQA PAAVQPLRIQ
1201: DYCKDILASS KGSGTGEPFL GFKSVFSFL
0101: KMRDWKVKLG SLGINCLEMT GDSEFFNKKA IHDSDLILTT PEKFDSMSRH GVRDGGLGFF SDIALVLIDE VHLLNDPRGA ALEAVVSRIK MLSRLGNMKS
0201: APLANVRFIA VSATISNAED IAEWLLAPPE GIKRFGEEMR PVKLTTKVLG YAPAKNDFLF ERRLQSFIFD ILMQHSRGKS ALVFCSTRKG AQEAAQCLSQ
0301: TAGSLGYSNP FMKSMQQYEH LREASLTCSD KQLQSCIVHG VGFHNGGLCL KDRSLVEGLF LKGDLQILCT TNTLAHGINL PAHTVVIKST QFFNKEKGSY
0401: VEYERSMVLQ MCGRAGRPPF DDTGTVVIMT RRETVHLYEN LLSGCEMVES QLLPCAVEHL NAEIVQLTVS DITLAIEWLK CSYLYIRIKK NPEHYGIKRG
0501: IPRDLLEKQM RDICVEKIHE LGEYGLIWTD GDGFSLKPLE PGRLMTKFYL KFDTMKLIVK ASACCSLEDL LHIICRSAEI SWIQLRRNEK KTLNDINSDK
0601: EGRLRFHVVS ENGKKKKRIQ TREDKIFVLV NDCLTGDPLM HDLSLNQETN SICSNGCRIA KCMKEYFIYK RSYRSAINSM LLAKCLDQKL WESSVFLLKQ
0701: LPGIGIVTAK ALKTAGVDSF ESLATADARK LESATGRNYP FGNQIKESLS SLPPKIDIQI EDAGNKQGKS TITVTLSRQS QAVRSKAREF SSPYSVKLLV
0801: PCPQSARVTL KVDLIFEEHV GIDIHKKHVV SREDDFHVTK AYGTEKQKPL ISLPADICLV SSRTAETSSA QPHIGRSPLS KEVCVIEDDD DANVPDKVDN
0901: MPGTRTFNNL ASLEVPSFDL MLEEDNGDMQ DVLFPEPTKA ECRSATSNTI FDHIRKKSRD FPTLMLSKSM DSSYEPLILK KMKTSRGQFN LDQGILHANE
1001: VTPMDSEHSE LRVSPTNTAE KCRRILSRTS EKSRSLFAEK VYSPFEKSKS LSRIPDENSV QFAVRTDSLS EKTKILWTAA DENSQQFGGK RDSPSEKSKI
1101: LMRPPDDGTL QFAGRRGSPS EKSNVLSRTP DENSLQFAAK RDSSSAKSNV LSKTPDMDSA QFAGRRGNPS EKNKLCSSSP FPDFQAMRQA PAAVQPLRIQ
1201: DYCKDILASS KGSGTGEPFL GFKSVFSFL
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.