Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03992 | Canola | nucleus | 88.28 | 88.9 |
| Bra033025.1-P | Field mustard | nucleus | 84.86 | 88.67 |
| CDY49767 | Canola | nucleus | 87.58 | 88.51 |
| PGSC0003DMT400001251 | Potato | nucleus | 18.29 | 75.18 |
| Os02t0617500-01 | Rice | cytosol | 39.63 | 72.71 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 62.99 | 60.5 |
| Solyc02g086580.2.1 | Tomato | cytosol | 62.12 | 58.97 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 56.69 | 58.7 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 65.27 | 58.51 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 54.33 | 55.35 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 53.89 | 50.12 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 55.38 | 49.41 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 55.21 | 49.26 |
| OQU85316 | Sorghum | nucleus | 54.33 | 47.95 |
| Zm00001d051111_P001 | Maize | nucleus | 54.24 | 47.95 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 28.35 | 44.02 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 11.46 | 13.26 |
| AT2G06990.1 | Thale cress | nucleus | 10.59 | 12.16 |
| AT1G70070.1 | Thale cress | plastid | 12.25 | 11.96 |
| AT2G42270.1 | Thale cress | cytosol | 22.22 | 11.69 |
| AT1G20960.1 | Thale cress | cytosol | 21.87 | 11.52 |
| AT3G46960.1 | Thale cress | nucleus | 12.69 | 10.76 |
| AT5G61140.2 | Thale cress | plastid | 20.04 | 10.62 |
| AT4G32700.2 | Thale cress | nucleus | 18.02 | 9.56 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | EntrezGene:822395 |
| UniProt:A0A1I9LN50 | ProteinID:ANM64008.1 | ProteinID:ANM64009.1 | ProteinID:ANM64011.1 | ProteinID:ANM64012.1 | ArrayExpress:AT3G27730 |
| EnsemblPlantsGene:AT3G27730 | RefSeq:AT3G27730 | TAIR:AT3G27730 | RefSeq:AT3G27730-TAIR-G | EnsemblPlants:AT3G27730.2 | Unigene:At.53523 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | RefSeq:NP_001326061.1 | RefSeq:NP_001326062.1 | RefSeq:NP_001326064.1 | RefSeq:NP_001326065.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF388 | Symbol:RCK | SMART:SM00487 | SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 |
| SUPFAM:SSF52540 | InterPro:Sec63-dom | UniParc:UPI0008489F25 | SEG:seg | : | : |
Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
Coordinates
chr3:-:10273098..10280631
Molecular Weight (calculated)
129676.0 Da
IEP (calculated)
7.951
GRAVY (calculated)
-0.404
Length
1143 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAEVINHS SQIGEVSHHL HNFFMIILIK RLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.