Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 58.22 | 95.24 |
| PGSC0003DMT400001251 | Potato | nucleus | 21.84 | 94.6 |
| Os02t0617500-01 | Rice | cytosol | 38.21 | 73.84 |
| CDY49767 | Canola | nucleus | 58.97 | 62.78 |
| Bra033025.1-P | Field mustard | nucleus | 56.98 | 62.71 |
| CDY03992 | Canola | nucleus | 58.89 | 62.47 |
| VIT_14s0066g00880.t01 | Wine grape | nucleus | 66.11 | 62.43 |
| AT3G27730.2 | Thale cress | nucleus | 58.97 | 62.12 |
| KRH07179 | Soybean | endoplasmic reticulum, plastid | 61.38 | 62.1 |
| GSMUA_Achr1P12000_001 | Banana | cytosol, nucleus, plastid | 53.41 | 58.24 |
| HORVU4Hr1G049830.57 | Barley | nucleus | 52.74 | 56.6 |
| TraesCS4D01G171000.1 | Wheat | nucleus | 52.99 | 51.91 |
| OQU85316 | Sorghum | nucleus | 54.98 | 51.12 |
| TraesCS4A01G136200.1 | Wheat | nucleus | 54.32 | 51.05 |
| Zm00001d051111_P001 | Maize | nucleus | 54.82 | 51.04 |
| TraesCS4B01G168700.1 | Wheat | nucleus | 54.24 | 50.98 |
| Solyc12g017860.1.1 | Tomato | nucleus | 11.46 | 14.68 |
| Solyc01g103080.2.1 | Tomato | nucleus | 11.96 | 14.53 |
| Solyc05g047520.2.1 | Tomato | nucleus | 11.21 | 14.42 |
| Solyc05g006530.2.1 | Tomato | nucleus | 12.04 | 12.56 |
| Solyc06g082100.2.1 | Tomato | nucleus | 19.27 | 11.8 |
| Solyc06g071620.2.1 | Tomato | nucleus | 19.52 | 11.67 |
| Solyc06g069480.2.1 | Tomato | nucleus | 19.52 | 11.25 |
| Solyc06g005990.2.1 | Tomato | cytosol | 12.38 | 10.95 |
| Solyc08g068120.1.1 | Tomato | cytosol, nucleus, plastid | 13.12 | 10.89 |
| Solyc08g068110.1.1 | Tomato | nucleus | 4.07 | 6.95 |
| Solyc06g065300.2.1 | Tomato | cytosol | 2.08 | 3.79 |
Protein Annotations
| Gene3D:1.10.10.2530 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.10 | MapMan:13.3.6.5.1.1 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:K4BBG6 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF02889 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF388 | SMART:SM00487 | SMART:SM00490 | SMART:SM00973 | SUPFAM:SSF158702 |
| SUPFAM:SSF52540 | InterPro:Sec63-dom | EnsemblPlantsGene:Solyc02g086580.2 | EnsemblPlants:Solyc02g086580.2.1 | UniParc:UPI0002767B43 | : |
Description
DExH-box ATP-dependent RNA helicase DExH17 [Source:Projected from Arabidopsis thaliana (AT3G27730) UniProtKB/Swiss-Prot;Acc:Q5D892]
Coordinates
chr2:+:49231376..49239594
Molecular Weight (calculated)
136557.0 Da
IEP (calculated)
6.830
GRAVY (calculated)
-0.342
Length
1204 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGYALKSVL DLPPVFRSTF SFRYFNSLQS ECFPACFQSD VNMVISAPTG SGKTVLFELC ILRLLSRFIS GEGKFIHIKG SLKAIYIAPS KALIQEKLRN
0101: WNQKLGSWGI NCLELTGDNE NYKITDIQDA DVILTTPEKF DAVTRYRIND GGLSFFGDIA LVLIDEVHFL NDPRGAALEA IVSRIKMLSH KPELKSSALA
0201: NVRFLAVSAT IPNIDDLAEW LMVPRQGVKR FGEEMRPVKL TNKVFGYTPA KNDFLFEKRL QNFVFDILMQ HSRGKSALVF CSTRKGAQEA AQQLSQTAMT
0301: FGHSNPFIKS REQQERLREA SLSCSDKQMQ SYILYGVGYH NGGLSMNDRN LIEGLFLNGD IQVLCTTNTL AHGINLPAHT VVLKSTQYFN KEKGTYMEYD
0401: RSTVLQMSGR AGRPPFDDTG MVIIMTRKET VHLYENLLSG CELVESQLLP CITEHLTAEI VQLTVSDITG AIEWMKCSFL YVRIRKNPEK YAVRKGLTGD
0501: RLERHMQDIC VQNVNELSRY QLIWTDEDGF LLKPLEPGKL MTKYYLKFNT MKHIMQAPGN CSIEDALQII CRAEELSWIQ LRRNEKKLLN DINIDKDNRL
0601: RFHILGDKEK RKKRVQTKEE KIFVLANDCL TGDPLVFDLS LSQDVNSICA NGYRIAKCMK EYFLYRKNYR GALSSALLTK SLYQKVWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVKSFASLS DADPRKIEMV TGRKYPFGNH IKESLLSLPP EIEMRVEETE SQRQGKSKVM VTLTRLSQPA QTTKRHYADM VVGIEEDNLV
0801: LFHEKISPYS KTVMVPSPQQ GKLTVKADLI FDEFIGVDLH QKVVLINMVD HNFVMKYRTK QPSSFQNNDA CIIEDTQDAA QASCQVSHSL TEAGWSSDMP
0901: SFKLIDEDLD EVVLAAAVED DECRIINENT IFDHIREKAK NLPALTSLKG TRLPSLETLN LIRKRTREKQ LLLENAVGVS EELRRTKVPC HNMVIQSAEY
1001: IDLEENRPFS NKDQIPYSHH VSNAIYLPDE RGELFFETGS VPSETIAEET IFKYNPIDSK MFDSFENVKN TEDKLHSVAN GTCIIHQPEH YSSSFGFQET
1101: TPTKVTNNSA SKQIEEVEDL TLHGHTPGTS EKTDLSMETS RKDAEERSRL LSAADAYFIR NKVGYPLRSP SFKEQEGISS VQVGEISQPN SFLGFKSIFT
1201: FLFE
0101: WNQKLGSWGI NCLELTGDNE NYKITDIQDA DVILTTPEKF DAVTRYRIND GGLSFFGDIA LVLIDEVHFL NDPRGAALEA IVSRIKMLSH KPELKSSALA
0201: NVRFLAVSAT IPNIDDLAEW LMVPRQGVKR FGEEMRPVKL TNKVFGYTPA KNDFLFEKRL QNFVFDILMQ HSRGKSALVF CSTRKGAQEA AQQLSQTAMT
0301: FGHSNPFIKS REQQERLREA SLSCSDKQMQ SYILYGVGYH NGGLSMNDRN LIEGLFLNGD IQVLCTTNTL AHGINLPAHT VVLKSTQYFN KEKGTYMEYD
0401: RSTVLQMSGR AGRPPFDDTG MVIIMTRKET VHLYENLLSG CELVESQLLP CITEHLTAEI VQLTVSDITG AIEWMKCSFL YVRIRKNPEK YAVRKGLTGD
0501: RLERHMQDIC VQNVNELSRY QLIWTDEDGF LLKPLEPGKL MTKYYLKFNT MKHIMQAPGN CSIEDALQII CRAEELSWIQ LRRNEKKLLN DINIDKDNRL
0601: RFHILGDKEK RKKRVQTKEE KIFVLANDCL TGDPLVFDLS LSQDVNSICA NGYRIAKCMK EYFLYRKNYR GALSSALLTK SLYQKVWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVKSFASLS DADPRKIEMV TGRKYPFGNH IKESLLSLPP EIEMRVEETE SQRQGKSKVM VTLTRLSQPA QTTKRHYADM VVGIEEDNLV
0801: LFHEKISPYS KTVMVPSPQQ GKLTVKADLI FDEFIGVDLH QKVVLINMVD HNFVMKYRTK QPSSFQNNDA CIIEDTQDAA QASCQVSHSL TEAGWSSDMP
0901: SFKLIDEDLD EVVLAAAVED DECRIINENT IFDHIREKAK NLPALTSLKG TRLPSLETLN LIRKRTREKQ LLLENAVGVS EELRRTKVPC HNMVIQSAEY
1001: IDLEENRPFS NKDQIPYSHH VSNAIYLPDE RGELFFETGS VPSETIAEET IFKYNPIDSK MFDSFENVKN TEDKLHSVAN GTCIIHQPEH YSSSFGFQET
1101: TPTKVTNNSA SKQIEEVEDL TLHGHTPGTS EKTDLSMETS RKDAEERSRL LSAADAYFIR NKVGYPLRSP SFKEQEGISS VQVGEISQPN SFLGFKSIFT
1201: FLFE
0001: MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
0101: WNQKFNSWGI SCLELTGDNE TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA IVSRLKILSS NHELRSSTLA
0201: SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT
0301: YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD
0401: RSTLLQMSGR AGRPPFDDTG MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL YVRMKKNPEN YAIKKGIPKD
0501: RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL
0601: RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI
0701: GMVTAKALHS MGVRSFEALA EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL QSTKRHYADL IVGSEEENLI
0801: HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD
0901: MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA
1001: QQITSPGYAS FAEKTETERP FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI TSDAPSEILS FDISMVKRSD
1101: TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL
Arabidopsis Description
RCKDNA helicase ROCK-N-ROLLERS [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.