Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51661 | Canola | nucleus | 66.64 | 62.15 |
| VIT_04s0008g03960.t01 | Wine grape | nucleus | 70.3 | 47.27 |
| HORVU1Hr1G065680.1 | Barley | nucleus | 54.86 | 46.99 |
| CDY23339 | Canola | nucleus | 63.89 | 46.1 |
| Bra040938.1-P | Field mustard | nucleus | 67.26 | 45.89 |
| KRH16213 | Soybean | nucleus | 67.54 | 45.65 |
| AT4G32700.2 | Thale cress | nucleus | 66.92 | 45.08 |
| GSMUA_Achr11P... | Banana | nucleus | 61.41 | 43.61 |
| Os12t0291000-00 | Rice | nucleus | 60.58 | 42.86 |
| TraesCS1A01G323500.1 | Wheat | plastid | 60.92 | 42.85 |
| TraesCS1D01G324400.1 | Wheat | plastid | 60.79 | 42.75 |
| TraesCS1B01G336400.1 | Wheat | plastid | 60.92 | 42.46 |
| Bra011372.1-P | Field mustard | nucleus | 67.19 | 42.41 |
| OQU79067 | Sorghum | plastid | 60.3 | 42.11 |
| Zm00001d023796_P033 | Maize | nucleus, plastid | 60.3 | 41.79 |
| HORVU0Hr1G026710.1 | Barley | plastid | 54.93 | 41.34 |
| Solyc02g086580.2.1 | Tomato | cytosol | 10.89 | 13.12 |
| Solyc06g065300.2.1 | Tomato | cytosol | 5.58 | 12.29 |
| Solyc01g103080.2.1 | Tomato | nucleus | 8.2 | 12.01 |
| Solyc05g047520.2.1 | Tomato | nucleus | 7.72 | 11.97 |
| Solyc12g017860.1.1 | Tomato | nucleus | 7.51 | 11.6 |
| Solyc05g006530.2.1 | Tomato | nucleus | 8.82 | 11.09 |
| Solyc06g071620.2.1 | Tomato | nucleus | 14.54 | 10.48 |
| Solyc06g082100.2.1 | Tomato | nucleus | 13.03 | 9.61 |
| CDY51662 | Canola | nucleus | 5.03 | 9.51 |
| Solyc06g005990.2.1 | Tomato | cytosol | 8.48 | 9.04 |
| Solyc06g069480.2.1 | Tomato | nucleus | 11.85 | 8.24 |
| Solyc08g068110.1.1 | Tomato | nucleus | 0.28 | 0.57 |
| PGSC0003DMT400037575 | Potato | cytosol, extracellular | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.20 | Gene3D:1.10.3380.20 | Gene3D:1.20.1060.10 | MapMan:14.2.2 |
| Gene3D:3.30.420.10 | Gene3D:3.30.70.370 | Gene3D:3.40.50.300 | InterPro:DNA-dir_DNA_pol_A_palm_dom | InterPro:DNA_polymerase_A | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003887 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0006261 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008409 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016787 | GO:GO:0071897 | GO:GO:0090305 | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR036397 | UniProt:K4CM36 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF00476 |
| PRINTS:PR00868 | PFscan:PS51194 | PANTHER:PTHR10133 | PANTHER:PTHR10133:SF27 | InterPro:RNaseH_sf | SMART:SM00482 |
| SMART:SM00490 | SUPFAM:SSF158702 | SUPFAM:SSF52540 | SUPFAM:SSF56672 | EnsemblPlantsGene:Solyc08g068120.1 | EnsemblPlants:Solyc08g068120.1.1 |
| UniParc:UPI000276C690 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:57197747..57213998
Molecular Weight (calculated)
160646.0 Da
IEP (calculated)
8.011
GRAVY (calculated)
-0.196
Length
1451 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATAAALYQT EFRPVPLEEY VKVGNTIYNQ KMDIVRTISK AADLGGKDPD HIVELCNEVV QEGNSVLIFC SSRKGCESTA RHVAKHLKKF SLNQLSGQNE
0101: SIDITSAIDA LRRSPAGLDP ILEETLPAGV AYHHAGLTVE ERETVETCYR KGLVRVLTAT STLAAGVNLP ARRVIFRQPR IGRDFIDGTR YRQMAGRAGR
0201: TGIDTKGESV LICKPEEVKR ITALVNESCP PLHSCLSEDK NGMIHAILEV VAGGIVQTAS DINRYVRCTL LNSTKPFDDV VKSAQDSLRW LCHKKFLGWS
0301: EDTKLYTVTP LGRAAFGSSL SPEESLVVLD DLIRAREGFV LASDLHVVYL VTPINVDLEP DWELYYQRFM ELSTLDQSVG NRVGVQEPFL MRMAHGAPVR
0401: ASYRSNAGTK GLQGKLDNRS LNDHMLSDEN MLRICRRFFV SLILSRLVQM KEVPVIEVCG AFKVARGMVQ ALQENAGRFA SMVSVFCERL GWHDLEGLVS
0501: KFQNRVSFGV RAEIVELTTI PYVKGSRARA LYKAGLRTPE AIAEASVPEI IKVLFESSSW ADQGSAQRMV QLGVAKKIKN GARKIVLDKA EEARLAAFSA
0601: FKSLGLDVST LAQPVISTAA GHGAHKEAST SSAEGSTSSF ISLENANRIS STSIERSKEV NITIPDAGAE NAKSKTIADK EAFDIEGSNG LKTEVNESTH
0701: HIDNAKTSPY PTLNIKGIEG GGTCNDHNHA GKQHCEGAEI CNVRVKETSE KGPMNATAVV GGFDTFLGLW EAVEEFYFDV HFSKKSALNS NAPFEIYGIA
0801: ICWEDSPVYY VNLPRDLFWS NSKRNSQLSP ITNDDIGNVL PPNLQLEIAI HRWNRISTIM RKKDIKKFAW NLKVQIQVLK HPTVSIQRFG GLSLLVKSLG
0901: VDLIDNNCYL LSPVPIQDAI DLCIVAWVLW PDEEKGSNPS IEKEVKKRLS IEAAAAANRN GRWKNQMRQV AHNGCCRRAA QTRALRSVLW KLVISEGLVE
1001: ALGATEMPLV NVLADMELCG IGVDMEGCLQ ARQILGRKLK ILEKEAYKLA GMTFSLYTAA EIANVLYGHL QLPVPEGHKK GKKHPSTDKH CLDLLRNEHP
1101: IVPIIKEHRT LAKLLNCTLG SICSLARLSM RTQRYTLHGH WLQTTTATGR LSMEEPNLQC VEHMVDFKMN NKDKGVCPLD VNNYKINARD FFVSTQDNWL
1201: LLTADYSQIE LRLMAHFSKD SSLIELLSEP QGDVFNMIAA KWTGKTEAIV SQEERDQTKR LVYGILYGMG AKSLAEQIDC SADEAAERIE SFKRSFPGVA
1301: SWLQEAVTSC REKGYIETLK GRKRFLAKIN FGNSKEKSKA QRQAVNSICQ GSAADIIKIA MINIHSVLDH FEKSLSHSAV DEKFHVLKGR CRIILQVHDE
1401: LVLEADPSVA KEAGLLLQMS MENAVSLLVP LHVKLKIGST WGSLEPFQAG E
0101: SIDITSAIDA LRRSPAGLDP ILEETLPAGV AYHHAGLTVE ERETVETCYR KGLVRVLTAT STLAAGVNLP ARRVIFRQPR IGRDFIDGTR YRQMAGRAGR
0201: TGIDTKGESV LICKPEEVKR ITALVNESCP PLHSCLSEDK NGMIHAILEV VAGGIVQTAS DINRYVRCTL LNSTKPFDDV VKSAQDSLRW LCHKKFLGWS
0301: EDTKLYTVTP LGRAAFGSSL SPEESLVVLD DLIRAREGFV LASDLHVVYL VTPINVDLEP DWELYYQRFM ELSTLDQSVG NRVGVQEPFL MRMAHGAPVR
0401: ASYRSNAGTK GLQGKLDNRS LNDHMLSDEN MLRICRRFFV SLILSRLVQM KEVPVIEVCG AFKVARGMVQ ALQENAGRFA SMVSVFCERL GWHDLEGLVS
0501: KFQNRVSFGV RAEIVELTTI PYVKGSRARA LYKAGLRTPE AIAEASVPEI IKVLFESSSW ADQGSAQRMV QLGVAKKIKN GARKIVLDKA EEARLAAFSA
0601: FKSLGLDVST LAQPVISTAA GHGAHKEAST SSAEGSTSSF ISLENANRIS STSIERSKEV NITIPDAGAE NAKSKTIADK EAFDIEGSNG LKTEVNESTH
0701: HIDNAKTSPY PTLNIKGIEG GGTCNDHNHA GKQHCEGAEI CNVRVKETSE KGPMNATAVV GGFDTFLGLW EAVEEFYFDV HFSKKSALNS NAPFEIYGIA
0801: ICWEDSPVYY VNLPRDLFWS NSKRNSQLSP ITNDDIGNVL PPNLQLEIAI HRWNRISTIM RKKDIKKFAW NLKVQIQVLK HPTVSIQRFG GLSLLVKSLG
0901: VDLIDNNCYL LSPVPIQDAI DLCIVAWVLW PDEEKGSNPS IEKEVKKRLS IEAAAAANRN GRWKNQMRQV AHNGCCRRAA QTRALRSVLW KLVISEGLVE
1001: ALGATEMPLV NVLADMELCG IGVDMEGCLQ ARQILGRKLK ILEKEAYKLA GMTFSLYTAA EIANVLYGHL QLPVPEGHKK GKKHPSTDKH CLDLLRNEHP
1101: IVPIIKEHRT LAKLLNCTLG SICSLARLSM RTQRYTLHGH WLQTTTATGR LSMEEPNLQC VEHMVDFKMN NKDKGVCPLD VNNYKINARD FFVSTQDNWL
1201: LLTADYSQIE LRLMAHFSKD SSLIELLSEP QGDVFNMIAA KWTGKTEAIV SQEERDQTKR LVYGILYGMG AKSLAEQIDC SADEAAERIE SFKRSFPGVA
1301: SWLQEAVTSC REKGYIETLK GRKRFLAKIN FGNSKEKSKA QRQAVNSICQ GSAADIIKIA MINIHSVLDH FEKSLSHSAV DEKFHVLKGR CRIILQVHDE
1401: LVLEADPSVA KEAGLLLQMS MENAVSLLVP LHVKLKIGST WGSLEPFQAG E
0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD
Arabidopsis Description
TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.