Factsheet for Zm00001d023796_P033

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79067	Sorghum	plastid	91.69	92.4
HORVU1Hr1G065680.1	Barley	nucleus	61.41	75.92
Os12t0291000-00	Rice	nucleus	74.21	75.77
PGSC0003DMT400037575	Potato	cytosol, extracellular	5.68	74.38
TraesCS1A01G323500.1	Wheat	plastid	72.54	73.63
TraesCS1B01G336400.1	Wheat	plastid	73.07	73.49
TraesCS1D01G324400.1	Wheat	plastid	72.25	73.34
HORVU0Hr1G026710.1	Barley	plastid	67.29	73.08
CDY51661	Canola	nucleus	47.23	63.56
Solyc08g068120.1.1	Tomato	cytosol, nucleus, plastid	41.79	60.3
GSMUA_Achr11P...	Banana	nucleus	56.3	57.71
VIT_04s0008g03960.t01	Wine grape	nucleus	55.25	53.61
CDY23339	Canola	nucleus	50.96	53.06
KRH16213	Soybean	nucleus	53.82	52.49
Bra040938.1-P	Field mustard	nucleus	52.91	52.09
AT4G32700.2	Thale cress	nucleus	53.49	52.0
Bra011372.1-P	Field mustard	nucleus	53.25	48.5
CDY51662	Canola	nucleus	15.9	43.36
Solyc08g068110.1.1	Tomato	nucleus	12.66	37.59
Zm00001d051111_P001	Maize	nucleus	10.27	16.63
Zm00001d045590_P005	Maize	cytosol, nucleus, plastid	7.26	15.2
Zm00001d008777_P008	Maize	nucleus	7.12	14.81
Zm00001d017982_P001	Maize	plastid	8.12	14.47
Zm00001d022286_P003	Maize	plastid	14.14	13.55
Zm00001d015314_P003	Maize	cytosol	8.98	13.31
Zm00001d048095_P005	Maize	mitochondrion	11.22	11.28

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	Gene3D:1.10.3380.20	Gene3D:1.20.1060.10	MapMan:14.2.2
Gene3D:3.30.70.370	Gene3D:3.40.50.300	UniProt:A0A1D6IVX5	ProteinID:AQK40092.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA-dir_DNA_pol_A_palm_dom	InterPro:DNA_polymerase_A	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003887	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006261	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009653	GO:GO:0009791
GO:GO:0009933	GO:GO:0009987	GO:GO:0010468	GO:GO:0016740	GO:GO:0016787	GO:GO:0051301
GO:GO:0071897	GO:GO:1902749	GO:GO:1990067	GO:GO:2000011	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00476
PRINTS:PR00868	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10133	PANTHER:PTHR10133:SF27	SMART:SM00482
SMART:SM00487	SMART:SM00490	SUPFAM:SSF158702	SUPFAM:SSF52540	SUPFAM:SSF56672	UniParc:UPI000842F612
EnsemblPlantsGene:Zm00001d023796	EnsemblPlants:Zm00001d023796_P033	EnsemblPlants:Zm00001d023796_T033	SEG:seg	:	:

Description

Helicase and polymerase-containing protein TEBICHI

Coordinates

chr10:+:21488399..21533885

Molecular Weight (calculated)

231123.0 Da

IEP (calculated)

8.022

GRAVY (calculated)

-0.267

Length

2094 amino acids

Sequence
(BLAST)

0001: MASGSSRPQI DQFFPAKKRR PSSRKGESPR PGTQHESPGG AKGSLEGYLV RSPCNRAVAA ASVVPVGSPR GGDPGARRSL SAAMDVDVGS SASVAAAAGD
0101: GADFDLRRST ADFLSHSCSA ILPLRGDCDY SEQCQMKQKR SASQSFLVPC DNDYVKKQRV AHCGGFEALK FGSLQELDDN VASMKQCINH HGGSEAVEES
0201: VEGEHVSCVG FSALQRCSFT PSTAQIKVGF SLAPVETLKS VSRNSLTSPG EEFWNAAIEL ADGISAQADK VRGRPEFDAA EDKSSCAVAA FFKTLPRSGR
0301: DELDCQNTVG SNDTHHIEKL SNKVESLAVN CQHIISSPLP VKQLDFFHED DIKVSGSKFE TKGSYETCNA QADRVPLKGS GRLEKENLMD PVDVLKRSAI
0401: NLHTDSAAMR CQGVFKSTTE GKVHPTQEAE RDSNLIRRDL NQPTHNENKS LAAYSNNRKT WIDSKSKVAS QEVEASTPTS SIPLKDHSKI SSWLPPDLCA
0501: IYMKKGISEL YPWQVECLLV EGVLGKRNLV YCASTSAGKS FVAEVLMLRQ ILSTGNMAIL VLPYVSICAE KAEHLEQLLE PLGRHVRSFY GNQGGGSLPK
0601: DTAVAVCTIE KANSLVNKLL EDGRLSELGV IVIDELHMVG DQHRGYLLEL MLTKLRYAAG EGTLQSCSGE VSSSSSGKIA SHGLQIIGMS ATMPNIAAVA
0701: DWLQAALYQT DFRPVPLEEF IKVGNQIFDK DMNVVRVLPK VADHGGKDPD HIVELCNEVV LQGHSVLLFC SSRKGCESTA RHVAKFLKLP SVGTTDVSSE
0801: FSDAAAAIEA LRRCPAGLDP ILGETLPFGV AYHHAGLTVE EREIVESCYR KGLVRVLTAT STLAAGVNLP ARRVIFRQPK IGRDFIDGTR YRQMAGRAGR
0901: TGIDTKGESI LVCRPEEVKR VTGIIRSNCP PLESCLSEDK NGMTHAIMEV VAGGIVQTAN DIHRYVRCTL LNSTRPFDDV VKSAQDSLRW LCHKSFLEWN
1001: HETKIYSATP LGRAAFGSSL NPEESLVVLD DLSRAREGFV LASDLHLVYL VTPINVDLEP DWELYYEKFM QLSSLEQSVG NRVGVIEPFL MHMAHGASIP
1101: FRARPERNTG LSNKSAQAAG NTLVSEHTIR VSKRFYVALM LSRLAQEIPI ADVCETFKVA RGMIQALQEN AGRFASMVSA FCQRLGWNDL EGLVSKFQNR
1201: VSFGVRAEIA ELTSIPFVKG SRARALYKSG LRTPVAIAEA SIPEIAKALF ESSAWSGQGD SGLRRMQFGV AKKIKNGARK IVLEEAEAAR VAAFSAFKSL
1301: GVEVPQFTAP PLAAIEEYPT HDTIDQAKLN KLASGTHSRD DKNMNTCSDY ATPRASTYSL RKDTSPAPSI QMKENAGLSK NVQITRQGAS SSLSTEIADG
1401: SSRDVAEKGP VHAYNFPGGF DCFLDQWSTA SNFFFDVHFI KRSMKPSLNL FEVFGLAVCW EKSPIYYCNF PKDLVTTGNN NIKEMWGNFQ RRWEKIADIM
1501: KQKSVQKMTW NLKIQIQALK SPYISCQRLE RFHLDHKMLD KVEVLNNSYM LLSPVSVYNG LDICLLAWVL WPDEESRAVP NLEKFVKRRL HSQEAAAANR
1601: DGRWRNQMHK AAHNGCCRRA AQTRALYTVL KKLLTQNLSV LVETIEAPLV NVLADMELWG IGADMDACLR ARHIITKKLK ELEKEAYRLA GKNFSLNATA
1701: DIADILYTHL KLPVPKGCEK GKLHPSTDKQ SLDHLRDQHP IIPLIKEHRT LAKLLNGTLW SICSRAQLCT QSQRYIIHGN WLQTSTATGR LSMEEPNLQC
1801: VEHVVEFDTG KSDKDYSSIS VDDHHKINAR DFFIPTKENW LFITADYSQI ELRLMAHFSK DHMLVELLKK PDGDVFTMIA SRWAEKEEAL ISSKERENTK
1901: RFIYGILYGM GANSLAEQLQ CSTEEAAQKI QSFRRFFPGV SSWLHEVVLS CRQKGFVETL LGRRRVLTKI TAGNSKEKAK AQRQAVNSIC QGSAADIIKV
2001: AMIRVHSIIT NRTSAADSTD EVTRKFSELG GQCHLILQVH DELVLEVDPC MVAQAGRLLQ ICMEEAASLL VPLRTKIKVG KTWGSLEPFH PEPC

Best Arabidopsis Sequence Match ( AT4G32700.2 )
(BLAST)

0001: MDSDSSKSRI DQFYVSKKRK HQSPNLKSGR NEKNVKVTGE RSPGDKGTLD SYLKASLDDK STTNSGLQAR QEAFTRKLDL EVSASSVGQN IHPCLPKPVS
0101: FATFKECLGQ NGSQDLHKEG VAAETHATDG LLCANQKDNS ELRDFATSFL SLYCSGVQSV VGSPPHQKEN ELKRRSSSSS LAQDIQISHK RRCESENIPS
0201: LDDLTNPLGS KPESLARNGN NRDKPVSDPT KKMPSNESVE IPMGLRKCSK APESSAHLTE FHTPGSAIKS CPVGTPKSGC GSSMFSPGEA FWNEAIQVAD
0301: GLTIPIENFG SVEAKVRDQH VTILSCSKKT DKCTEKLERS LDLDEIRVKD KDAIGFSKVV EKHGRDFNKE VYQLPVKNLE LLFQDKNING GIQERCASFD
0401: QNNITLGSSR ISESAFVGNK GCENLDIANN AQADKGLIGK MYPEPEGKKV LLCEENRGVR SVSMISNMRK PVGSSESEES HTPSSSHRNY DGLSLSTWLP
0501: SEVCSVYNKK GISKLYPWQV ECLQVDGVLQ KRNLVYCAST SAGKSFVAEV LMLRRVIRTG KMALLVLPYV SICAEKAEHL EVLLEPLGKH VRSYYGNQGG
0601: GTLPKDTSVA VCTIEKANSL INRLLEEGRL SELGIIVIDE LHMVGDQHRG YLLELMLTKL RYAAGEGSSE SSSGESSGTS SGKADPAHGL QIVGMSATMP
0701: NVGAVADWLQ AALYQTEFRP VPLEEYIKVG STIYNKKMEV VRTIPKAADM GGKDPDHIVE LCNEVVQEGN SVLIFCSSRK GCESTARHIS KLIKNVPVNV
0801: DGENSEFMDI RSAIDALRRS PSGVDPVLEE TLPSGVAYHH AGLTVEEREI VETCYRKGLV RVLTATSTLA AGVNLPARRV IFRQPMIGRD FIDGTRYKQM
0901: SGRAGRTGID TKGDSVLICK PGELKRIMAL LNETCPPLQS CLSEDKNGMT HAILEVVAGG IVQTAKDIHR YVRCTLLNST KPFQDVVKSA QDSLRWLCHR
1001: KFLEWNEETK LYTTTPLGRG SFGSSLCPEE SLIVLDDLLR AREGLVMASD LHLVYLVTPI NVGVEPNWEL YYERFMELSP LEQSVGNRVG VVEPFLMRMA
1101: HGATVRTLNR PQDVKKNLRG EYDSRHGSTS MKMLSDEQML RVCKRFFVAL ILSKLVQEAS VTEVCEAFKV ARGMVQALQE NAGRFSSMVS VFCERLGWHD
1201: LEGLVAKFQN RVSFGVRAEI VELTSIPYIK GSRARALYKA GLRTSQAIAE ASIPEIVKAL FESSAWAAEG TGQRRIHLGL AKKIKNGARK IVLEKAEEAR
1301: AAAFSAFKSL GLDVNELSKP LPLAPASSLN GQETTERDIS RGSVGPDGLQ QSIEGHMECE NFDMDNHREK PSEVLGDATL GVSSEINLTS RLPNFRPIGT
1401: AVGTNGPSAV SILSSDTFPI PVYDNREIKP KDNVEQHLTR NDHIPLSSNK DGTGEKGPVT AGNISGGFDS FLELWGSAGE FFFDLHYNKL QDLNSRISYE
1501: IHGIAICWNC SPVYYVNLNK DLPNLECVEK QKLIEDAVIG KSEVLASHNM LDVIKSRWNK ISKIMGNVNT RKFTWNLKVQ IQVLKSPAIS IQRCTRLNLP
1601: EGIRDELVDG SWLMMPPLHT SHTIDMSIVI WILWPDEERH SNPNIDKEVK KRLSPEAAEA ANRSGRWRNQ IRRVAHNGCC RRVAQTRALC SALWKILVSE
1701: ELLQALTTIE MPLVNVLADM ELWGIGIDIE GCLRARNILR DKLRSLEKKA FELAGMTFSL HNPADIANVL FGQLKLPIPE NQSKGKLHPS TDKHCLDLLR
1801: NEHPVVPIIK EHRTLAKLLN CTLGSICSLA KLRLSTQRYT LHGRWLQTST ATGRLSIEEP NLQSVEHEVE FKLDKNGRDV SSDADRYKIN ARDFFVPTQE
1901: NWLLLTADYS QIELRLMAHF SRDSSLISKL SQPEGDVFTM IAAKWTGKAE DSVSPHDRDQ TKRLIYGILY GMGANRLAEQ LECTSDEAKE KIRSFKSSFP
2001: AVTSWLNETI SFCQEKGYIQ TLKGRRRFLS KIKFGNAKEK SKAQRQAVNS MCQGSAADII KIAMINIYSA IAEDVDTAAS SSSSETRFHM LKGRCRILLQ
2101: VHDELVLEVD PSYVKLAAML LQTSMENAVS LLVPLHVKLK VGKTWGSLEP FQTD

Arabidopsis Description

TEBHelicase and polymerase-containing protein TEBICHI [Source:UniProtKB/Swiss-Prot;Acc:Q588V7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.