Factsheet for Zm00001d045590_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87693	Sorghum	cytosol	96.6	96.5
Os12t0279000-01	Rice	mitochondrion	68.9	88.79
TraesCS7D01G010500.1	Wheat	cytosol	87.7	88.77
TraesCS4A01G484300.2	Wheat	cytosol	87.8	88.24
HORVU7Hr1G001080.1	Barley	cytosol, nucleus, plastid	87.1	83.67
TraesCS7A01G010800.1	Wheat	cytosol	87.5	82.16
GSMUA_Achr2P17890_001	Banana	cytosol, nucleus, plastid	80.9	79.94
VIT_06s0009g01750.t01	Wine grape	cytosol	79.7	79.94
KRH46878	Soybean	nucleus	78.0	79.51
PGSC0003DMT400053368	Potato	nucleus	78.2	78.83
Solyc01g103080.2.1	Tomato	nucleus	78.0	78.71
CDY45149	Canola	nucleus	29.3	77.51
Bra027835.1-P	Field mustard	nucleus	73.2	76.57
Bra035425.1-P	Field mustard	nucleus	28.9	76.45
AT1G59760.1	Thale cress	cytosol, nucleus, plastid	75.5	76.42
CDY30903	Canola	nucleus	74.8	75.79
CDY65064	Canola	nucleus	74.1	74.77
CDY45148	Canola	endoplasmic reticulum	46.5	74.76
Bra035426.1-P	Field mustard	cytosol, golgi, plastid	46.3	74.68
CDY33604	Canola	cytosol	16.8	57.14
Zm00001d008777_P008	Maize	nucleus	48.3	48.01
Zm00001d015314_P003	Maize	cytosol	35.0	24.79
Zm00001d017982_P001	Maize	plastid	23.6	20.09
Zm00001d051111_P001	Maize	nucleus	13.5	10.44
Zm00001d022286_P003	Maize	plastid	18.5	8.47
Zm00001d048095_P005	Maize	mitochondrion	17.3	8.3
Zm00001d023796_P033	Maize	nucleus, plastid	15.2	7.26

Protein Annotations

Gene3D:1.10.3380.30	Gene3D:1.20.1500.20	EntrezGene:103638180	MapMan:16.8.1.2.3.1	Gene3D:2.40.30.300	Gene3D:3.40.50.300
ProteinID:AQL02693.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003724	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006364	GO:GO:0006401	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0031125	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:K7W7N9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF08148	PFAM:PF13234
PIRSF:PIRSF005198	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR12131	PANTHER:PTHR12131:SF7	SMART:SM00487
SMART:SM00490	SMART:SM01142	SUPFAM:SSF52540	InterPro:Ski2-like	InterPro:Ski2_C	UniParc:UPI0002220838
EnsemblPlantsGene:Zm00001d045590	EnsemblPlants:Zm00001d045590_P005	EnsemblPlants:Zm00001d045590_T005	InterPro:rRNA_proc-arch_dom	SEG:seg	:

Description

DExH-box ATP-dependent RNA helicase DExH9

Coordinates

chr9:-:27537950..27546688

Molecular Weight (calculated)

113340.0 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.312

Length

1000 amino acids

Sequence
(BLAST)

001: METLKRKAVD SPGDAYQASS LKPPLAAAAV EPRAPTTLAA AEPVACVHDV SYPEGYDPSA STSRAIAGGA DASEPAKKFP FQLDPFQAEA IRCLDNGESV
101: MVSAHTSAGK TVVALYAIAM SLRNQQRVIY TSPIKALSNQ KYREFKEEFS DVGLMTGDVT IEPNASCLVM TTEIWRSMQY KGSEVMREVA WVIFDEVHYM
201: RDRERGVVWE ESIVMAPKNS RFVFLSATVP NAKEFADWVA KVHKQPCHIV YTDYRPTPLQ HYVFPSGGDG LYLVVDEKGK FREDSFQKAL NALVPASDSA
301: KKKENGKRQK FTMAGTSSEE SDIFKMVKMI IQRQYDPVIL FSFSKRECEF LAMQMAKMDL NEDDEKANIE TIFWSAMDML SDDDKKLPQV SNMLPLLKRG
401: IGVHHSGLLP ILKEVIEILF QEGLIKCLFA TETFSIGLNM PAKTVVFTNV RKFDGDRFRW LSSGEYIQMS GRAGRRGIDL RGICILMVDE KMEPSTAKMM
501: LKGSADSLNS AFHLSYNMLL NQMRSEDGDP EKLLRHSFYQ FQADRSLPDL EKQIKELESE RNSMVIEEAE SLKDYYDLLQ QHRSLKKDVH DIVLSPKHVL
601: PFLQPGRLVR IEYSTDEPAN FSIDENVTWG IIINFEKVKS HGEDKRPEDS DYTVDVLTRC SVTKDNSGKK TMKVVPLKAR GEPVVVSLSL SQIDGLSSIR
701: MYIPKDLIPV EVRENTLRKV EEVLLRFAKD GVPLLDPEED MKVQSKSFRK ATRRIEALES LFEKHDIRNS PHIQQKLKVF HAKQELSAKI KSIKKTMRSS
801: TALAFKDELK ARKRVLRRLG YVTSDDVVEV KGKVACEISS ADELTLTELM FSGALKDATV EQVVALLSCF VWQEKLQDAP KPREELDLLF YQLQETARRV
901: ANLQLECKIQ IDVESFVNSF RPDIMEAVYS WARGSKFYQI MEMTQVFEGS LIRAIRRLEE VLQQLILASK SIGETELEAK LEEAVNKIKR DIVFAASLYL

Best Arabidopsis Sequence Match ( AT1G59760.1 )
(BLAST)

001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL

Arabidopsis Description

MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.