Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g103080.2.1 | Tomato | nucleus | 98.39 | 98.49 |
| HORVU1Hr1G048420.1 | Barley | cytosol | 7.86 | 95.12 |
| VIT_06s0009g01750.t01 | Wine grape | cytosol | 83.47 | 83.05 |
| KRH46878 | Soybean | nucleus | 78.93 | 79.82 |
| Os12t0279000-01 | Rice | mitochondrion | 61.79 | 78.99 |
| EER87693 | Sorghum | cytosol | 79.33 | 78.62 |
| TraesCS7D01G010500.1 | Wheat | cytosol | 78.02 | 78.34 |
| Zm00001d045590_P005 | Maize | cytosol, nucleus, plastid | 78.83 | 78.2 |
| Bra035425.1-P | Field mustard | nucleus | 29.74 | 78.04 |
| CDY45149 | Canola | nucleus | 29.74 | 78.04 |
| TraesCS4A01G484300.2 | Wheat | cytosol | 78.02 | 77.79 |
| AT1G59760.1 | Thale cress | cytosol, nucleus, plastid | 76.81 | 77.13 |
| Bra027835.1-P | Field mustard | nucleus | 74.29 | 77.09 |
| GSMUA_Achr2P17890_001 | Banana | cytosol, nucleus, plastid | 78.43 | 76.88 |
| CDY30903 | Canola | nucleus | 75.91 | 76.29 |
| CDY45148 | Canola | endoplasmic reticulum | 47.48 | 75.72 |
| CDY65064 | Canola | nucleus | 75.4 | 75.48 |
| Bra035426.1-P | Field mustard | cytosol, golgi, plastid | 46.98 | 75.16 |
| HORVU7Hr1G001080.1 | Barley | cytosol, nucleus, plastid | 77.62 | 73.97 |
| TraesCS7A01G010800.1 | Wheat | cytosol | 77.42 | 72.11 |
| HORVU1Hr1G018080.31 | Barley | cytosol, nucleus, plastid | 18.65 | 63.36 |
| CDY33604 | Canola | cytosol | 17.44 | 58.84 |
| PGSC0003DMT400052548 | Potato | cytosol | 46.17 | 46.78 |
| PGSC0003DMT400035614 | Potato | cytosol | 46.88 | 46.69 |
| PGSC0003DMT400053718 | Potato | cytosol | 4.64 | 37.7 |
| PGSC0003DMT400017202 | Potato | cytosol | 4.94 | 34.75 |
| PGSC0003DMT400053716 | Potato | cytosol, mitochondrion | 2.52 | 33.33 |
| PGSC0003DMT400058295 | Potato | plastid | 24.9 | 21.37 |
| PGSC0003DMT400001251 | Potato | nucleus | 5.85 | 20.86 |
| PGSC0003DMT400037575 | Potato | cytosol, extracellular | 2.72 | 16.88 |
| PGSC0003DMT400078069 | Potato | cytosol | 19.15 | 8.74 |
| PGSC0003DMT400069435 | Potato | mitochondrion | 1.31 | 5.56 |
| PGSC0003DMT400001255 | Potato | cytosol, mitochondrion | 3.93 | 5.3 |
| PGSC0003DMT400037571 | Potato | nucleus, plastid | 2.42 | 4.38 |
Protein Annotations
| Gene3D:1.10.3380.30 | Gene3D:1.20.1500.20 | EntrezGene:102605528 | MapMan:16.8.1.2.3.1 | Gene3D:2.40.30.300 | Gene3D:3.40.50.300 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003724 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006401 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M1BUV6 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF08148 | PFAM:PF13234 | EnsemblPlantsGene:PGSC0003DMG400020706 | PGSC:PGSC0003DMG400020706 | EnsemblPlants:PGSC0003DMT400053368 |
| PIRSF:PIRSF005198 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR12131 | PANTHER:PTHR12131:SF7 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM01142 | SUPFAM:SSF52540 | InterPro:Ski2-like | InterPro:Ski2_C | UniParc:UPI000295C9EE |
| RefSeq:XP_006349284.1 | InterPro:rRNA_proc-arch_dom | SEG:seg | : | : | : |
Description
Helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400020706]
Coordinates
chr1:-:79841365..79850462
Molecular Weight (calculated)
112673.0 Da
IEP (calculated)
6.187
GRAVY (calculated)
-0.300
Length
992 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFKRKSQE FSNEGDIPPS KQLKQNDLLG VDEPVTCLHD VSYPEGYVPS ASTSGLPQQD SKPAKEFPFP LDPFQSEAIK CINNGESVMV SAHTSAGKTV
101: VALYAIALSL KNNQRVVYTS PIKALSNQKY REFKEEFSDV GLMTGDVTID PNASCLVMTT EIWRSMQYKG SEVTREVAWV IFDEVHYMRD RERGVVWEES
201: IVMAPKNSNF VFLSATVPNA KEFADWVAKV HQQPCHIVYT DYRPTPLQHY IFPSGGDGLY LVVDDKGKFR EDSFQKALNA LVPANEGDKK RESSKWQKGL
301: VVGKSGEDSD IFKMVKMIIQ RQYDPVICFS FSKRECEFLA MQMAKMDLNN DDEKVNIETI FWSAMDMLSD DDKKLPQVSN MLPLLKRGIG VHHSGLLPIL
401: KEVIEILFQE GFIKCLFATE TFSIGLNMPA KTVVFTNVRK FDGDKFRWLS SGEYIQMSGR AGRRGIDDRG ICILMVDEKL EPSTAKFMLK GSADALNSAF
501: HLSYNMLLNQ IRSEDGHPEN LLRNSFYQFQ ADRALPDLEK QAKILEEERN SIVIEEEDSL ERYYNLLEQY KSLKRDVRGI VFSPKYCLPF LQPGRLVCIE
601: CTKVDVDVPT FSINEEVTWG VIVNFERVKG ISEDDANKKP EDANYTVDVL TRCIVQKDEV GRKTIKVVRL KDAGEPAVVS LPLSQIDSLS SVRLVIPKDL
701: LPSEVRENTL KKVSEVLNRF LKEGMPLLHP EDDMKVQSSS YRKASSRIEA LESLFEEYEI AKSPLIKEKL KVLHKKKELT SKIKSIKKTL RTSTVLAFKD
801: ELKARKRALR RLGYIRDDVV LQKGKVASEI SSADELTLTE LMLNGTFRNI KVEDMVSLLS CFVWQEKLQD AQKPQEELGL LFAQLQDTAR QVAKVQLESK
901: VQIDVENFVS SFRPDIMEAV YAWAKGSKFY EIMEMTPVFE GSLIRAIRRL EEVLQQLIQA AKSIGDIVLE AKFEEAVTKI KRDIVFAASL YL
101: VALYAIALSL KNNQRVVYTS PIKALSNQKY REFKEEFSDV GLMTGDVTID PNASCLVMTT EIWRSMQYKG SEVTREVAWV IFDEVHYMRD RERGVVWEES
201: IVMAPKNSNF VFLSATVPNA KEFADWVAKV HQQPCHIVYT DYRPTPLQHY IFPSGGDGLY LVVDDKGKFR EDSFQKALNA LVPANEGDKK RESSKWQKGL
301: VVGKSGEDSD IFKMVKMIIQ RQYDPVICFS FSKRECEFLA MQMAKMDLNN DDEKVNIETI FWSAMDMLSD DDKKLPQVSN MLPLLKRGIG VHHSGLLPIL
401: KEVIEILFQE GFIKCLFATE TFSIGLNMPA KTVVFTNVRK FDGDKFRWLS SGEYIQMSGR AGRRGIDDRG ICILMVDEKL EPSTAKFMLK GSADALNSAF
501: HLSYNMLLNQ IRSEDGHPEN LLRNSFYQFQ ADRALPDLEK QAKILEEERN SIVIEEEDSL ERYYNLLEQY KSLKRDVRGI VFSPKYCLPF LQPGRLVCIE
601: CTKVDVDVPT FSINEEVTWG VIVNFERVKG ISEDDANKKP EDANYTVDVL TRCIVQKDEV GRKTIKVVRL KDAGEPAVVS LPLSQIDSLS SVRLVIPKDL
701: LPSEVRENTL KKVSEVLNRF LKEGMPLLHP EDDMKVQSSS YRKASSRIEA LESLFEEYEI AKSPLIKEKL KVLHKKKELT SKIKSIKKTL RTSTVLAFKD
801: ELKARKRALR RLGYIRDDVV LQKGKVASEI SSADELTLTE LMLNGTFRNI KVEDMVSLLS CFVWQEKLQD AQKPQEELGL LFAQLQDTAR QVAKVQLESK
901: VQIDVENFVS SFRPDIMEAV YAWAKGSKFY EIMEMTPVFE GSLIRAIRRL EEVLQQLIQA AKSIGDIVLE AKFEEAVTKI KRDIVFAASL YL
001: MGSVKRKSVE ESSDSAPPQK VQREDDSTQI INEELVGCVH DVSFPENYVP LAPSVHNKPP AKDFPFTLDS FQSEAIKCLD NGESVMVSAH TSAGKTVVAS
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
101: YAIAMSLKEN QRVIYTSPIK ALSNQKYRDF KEEFSDVGLM TGDVTIDPNA SCLVMTTEIL RSMQYKGSEI MREVAWIIFD EVHYMRDSER GVVWEESIVM
201: APKNSRFVFL SATVPNAKEF ADWVAKVHQQ PCHIVYTDYR PTPLQHYVFP AGGNGLYLVV DEKSKFHEDS FQKSLNALVP TNESDKKRDN GKFQKGLVIG
301: KLGEESDIFK LVKMIIQRQY DPVILFSFSK KECEALAMQM SKMVLNSDDE KDAVETIFAS AIDMLSDDDK KLPQVSNILP ILKRGIGVHH SGLLPILKEV
401: IEILFQEGLI KCLFATETFS IGLNMPAKTV VFTNVRKFDG DKFRWLSSGE YIQMSGRAGR RGIDKRGICI LMVDEKMEPA VAKSMLKGSA DSLNSAFHLS
501: YNMLLNQLRC EEGDPENLLR NSFFQFQADR AIPDLEKQIK SLEEERDSLV IEEEESLKNY YNLILQYKSL KKDIREIVFT PKYCLPFLLP NRAVCLDCTN
601: DDEEPQSFSI EDQDTWGVIM KFNKVKSLSE DDDSRRPEDA NYTVDVLTRC MVSKDGVGKK KVKAVPIKER GEPVVVTVPL SQIKSLSSAI MNIPKDLVPL
701: EARENALKKV SELLSRHPDG IPLDPEVDMK IKSSSYKKTV RRLEALENLF EKHKIAKSPL ITEKLKVLQM KEELIAKIKS LKKTVRSSTA LAFKDELKAR
801: KRVLRRLGYI TSDNVVELKG KVACEISSAE ELTLTELMFS GIFKDAKVEE LVSLLSCFVW RERLPDAAKP REELDLLFIQ LQDTARRVAE VQLDCKVEID
901: VESFVQSFRP DIMEAVYAWA KGSKFYEVME IARVFEGSLI RAIRRMEEVL QQLIVAAKSI GETQLEAKLE EAVSKIKRDI VFAASLYL
Arabidopsis Description
MTR4DExH-box ATP-dependent RNA helicase DExH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIF2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.